Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides SM_b21113 and SM_b21114 are separated by 44 nucleotides
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
SM_b21114: SM_b21114 - nitrate transport protein, at 755,267 to 756,592
_b21114
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand at 754.039 kb on - strand at 754.050 kb on + strand at 754.050 kb on + strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.108 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.289 kb on - strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.396 kb on - strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.504 kb on - strand, within SM_b21113 at 754.671 kb on + strand, within SM_b21113 at 754.672 kb on - strand, within SM_b21113 at 755.019 kb on + strand, within SM_b21113 at 755.046 kb on + strand, within SM_b21113 at 755.046 kb on + strand, within SM_b21113 at 755.047 kb on - strand, within SM_b21113 at 755.089 kb on - strand, within SM_b21113 at 755.145 kb on + strand at 755.145 kb on + strand at 755.146 kb on - strand at 755.146 kb on - strand at 755.206 kb on - strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.329 kb on + strand at 755.330 kb on - strand at 755.330 kb on - strand at 755.330 kb on - strand at 755.331 kb on + strand at 755.331 kb on + strand at 755.331 kb on + strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.332 kb on - strand at 755.455 kb on - strand, within SM_b21114 at 755.538 kb on + strand, within SM_b21114 at 755.538 kb on + strand, within SM_b21114 at 755.539 kb on - strand, within SM_b21114 at 755.539 kb on - strand, within SM_b21114 at 755.569 kb on - strand, within SM_b21114 at 755.598 kb on + strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.599 kb on - strand, within SM_b21114 at 755.794 kb on + strand, within SM_b21114 at 756.045 kb on + strand, within SM_b21114 at 756.046 kb on - strand, within SM_b21114 at 756.050 kb on - strand, within SM_b21114 at 756.195 kb on + strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 752,992 - -0.1 753,064 + SM_b21112 0.10 -0.3 753,213 + SM_b21112 0.28 +0.2 753,213 + SM_b21112 0.28 +1.0 753,384 + SM_b21112 0.48 +0.7 753,385 - SM_b21112 0.48 +0.8 753,423 + SM_b21112 0.53 +1.2 753,423 + SM_b21112 0.53 +0.1 753,628 - SM_b21112 0.77 +0.0 753,651 + SM_b21112 0.80 +0.7 753,651 + SM_b21112 0.80 +0.0 753,687 - SM_b21112 0.84 +0.7 753,776 - +0.2 753,824 + +1.2 753,824 + +0.6 753,825 - -0.7 753,932 + +1.1 753,932 + -0.0 753,933 - +0.9 753,933 - +0.2 754,039 - -0.2 754,050 + -0.5 754,050 + -0.9 754,051 - +0.3 754,051 - +0.8 754,051 - -0.3 754,108 + SM_b21113 0.13 -0.1 754,126 + SM_b21113 0.14 +1.0 754,126 + SM_b21113 0.14 +0.7 754,126 + SM_b21113 0.14 +4.0 754,126 + SM_b21113 0.14 -0.0 754,127 - SM_b21113 0.14 +0.5 754,127 - SM_b21113 0.14 -0.6 754,127 - SM_b21113 0.14 +0.6 754,127 - SM_b21113 0.14 +2.1 754,127 - SM_b21113 0.14 +0.3 754,289 - SM_b21113 0.27 +0.7 754,395 + SM_b21113 0.35 -0.1 754,395 + SM_b21113 0.35 +0.5 754,396 - SM_b21113 0.35 -0.5 754,503 + SM_b21113 0.44 -0.2 754,503 + SM_b21113 0.44 -0.7 754,503 + SM_b21113 0.44 +0.6 754,504 - SM_b21113 0.44 -0.5 754,671 + SM_b21113 0.57 -0.1 754,672 - SM_b21113 0.57 +0.1 755,019 + SM_b21113 0.84 +0.3 755,046 + SM_b21113 0.86 -0.7 755,046 + SM_b21113 0.86 -0.1 755,047 - SM_b21113 0.86 -0.4 755,089 - SM_b21113 0.90 -0.3 755,145 + +1.3 755,145 + -0.1 755,146 - +0.4 755,146 - -0.2 755,206 - -1.2 755,329 + -0.3 755,329 + +0.8 755,329 + +1.0 755,329 + -0.1 755,329 + -1.1 755,329 + +0.5 755,330 - -0.3 755,330 - +0.9 755,330 - -0.3 755,331 + +0.7 755,331 + +0.2 755,331 + +0.2 755,332 - -0.1 755,332 - +0.3 755,332 - -0.7 755,332 - +0.0 755,455 - SM_b21114 0.14 +0.1 755,538 + SM_b21114 0.20 +1.4 755,538 + SM_b21114 0.20 +0.6 755,539 - SM_b21114 0.21 +0.1 755,539 - SM_b21114 0.21 -0.0 755,569 - SM_b21114 0.23 +0.2 755,598 + SM_b21114 0.25 +0.5 755,599 - SM_b21114 0.25 +0.4 755,599 - SM_b21114 0.25 -0.1 755,599 - SM_b21114 0.25 -0.1 755,599 - SM_b21114 0.25 -0.5 755,599 - SM_b21114 0.25 +0.6 755,794 + SM_b21114 0.40 -1.4 756,045 + SM_b21114 0.59 -1.3 756,046 - SM_b21114 0.59 +1.7 756,050 - SM_b21114 0.59 +0.5 756,195 + SM_b21114 0.70 +0.3 756,196 - SM_b21114 0.70 +0.1 756,196 - SM_b21114 0.70 +0.0
Or see this region's nucleotide sequence