Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20022

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20021 and SM_b20022 are separated by 647 nucleotidesSM_b20022 and SM_b20023 are separated by 76 nucleotides SM_b20021: SM_b20021 - transcriptional regulator, at 29,540 to 30,010 _b20021 SM_b20022: SM_b20022 - hypothetical protein, at 30,658 to 31,224 _b20022 SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918 _b20023 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.843 kb on + strand, within SM_b20021at 29.987 kb on + strandat 29.987 kb on + strandat 29.988 kb on - strandat 30.008 kb on + strandat 30.170 kb on - strandat 30.170 kb on - strandat 30.189 kb on + strandat 30.189 kb on + strandat 30.189 kb on + strandat 30.190 kb on - strandat 30.196 kb on + strandat 30.196 kb on + strandat 30.197 kb on - strandat 30.370 kb on + strandat 30.371 kb on - strandat 30.371 kb on - strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.472 kb on - strandat 31.134 kb on + strand, within SM_b20022at 31.135 kb on - strand, within SM_b20022at 31.135 kb on - strand, within SM_b20022at 31.138 kb on + strand, within SM_b20022at 31.139 kb on - strand, within SM_b20022at 31.139 kb on - strand, within SM_b20022at 31.247 kb on + strandat 31.248 kb on - strandat 31.248 kb on - strandat 31.302 kb on + strandat 31.318 kb on - strandat 31.372 kb on + strandat 31.537 kb on + strandat 31.725 kb on + strand, within SM_b20023at 31.725 kb on + strand, within SM_b20023at 31.725 kb on + strand, within SM_b20023at 31.726 kb on - strand, within SM_b20023at 31.835 kb on + strand, within SM_b20023at 31.835 kb on + strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.965 kb on + strand, within SM_b20023at 31.965 kb on + strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 32.188 kb on + strand, within SM_b20023at 32.188 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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29,843 + SM_b20021 0.64 -1.6
29,987 + +0.7
29,987 + +0.1
29,988 - +0.3
30,008 + +0.5
30,170 - -1.4
30,170 - -1.8
30,189 + -0.3
30,189 + -3.0
30,189 + +0.4
30,190 - +0.6
30,196 + +0.2
30,196 + -0.2
30,197 - -0.3
30,370 + +1.2
30,371 - -1.0
30,371 - -1.3
30,471 + -0.1
30,471 + +0.4
30,471 + -0.3
30,471 + +1.9
30,471 + +1.2
30,472 - +0.4
31,134 + SM_b20022 0.84 -0.6
31,135 - SM_b20022 0.84 +0.2
31,135 - SM_b20022 0.84 -0.6
31,138 + SM_b20022 0.85 +0.5
31,139 - SM_b20022 0.85 -0.8
31,139 - SM_b20022 0.85 +0.6
31,247 + +0.1
31,248 - -0.7
31,248 - -1.2
31,302 + -2.0
31,318 - +1.2
31,372 + +1.2
31,537 + +0.2
31,725 + SM_b20023 0.12 -0.4
31,725 + SM_b20023 0.12 +0.5
31,725 + SM_b20023 0.12 +2.4
31,726 - SM_b20023 0.12 +0.2
31,835 + SM_b20023 0.15 +0.9
31,835 + SM_b20023 0.15 -0.0
31,836 - SM_b20023 0.15 +0.5
31,836 - SM_b20023 0.15 -0.2
31,836 - SM_b20023 0.15 -0.1
31,836 - SM_b20023 0.15 -1.0
31,965 + SM_b20023 0.18 -1.0
31,965 + SM_b20023 0.18 +0.6
31,966 - SM_b20023 0.18 +0.9
31,966 - SM_b20023 0.18 -0.5
31,966 - SM_b20023 0.18 -0.0
31,966 - SM_b20023 0.18 -1.3
31,966 - SM_b20023 0.18 +0.2
31,966 - SM_b20023 0.18 +0.3
31,966 - SM_b20023 0.18 +0.2
32,188 + SM_b20023 0.25 +0.8
32,188 + SM_b20023 0.25 +0.0
32,190 + SM_b20023 0.25 +0.3
32,190 + SM_b20023 0.25 +0.6
32,190 + SM_b20023 0.25 +0.6
32,191 - SM_b20023 0.25 +0.1
32,191 - SM_b20023 0.25 -0.4
32,191 - SM_b20023 0.25 +0.2
32,191 - SM_b20023 0.25 +0.2

Or see this region's nucleotide sequence