Experiment: Post-colonization (Day 10) - Cage4;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt p5482_05 and p5482_06 are separated by 759 nucleotides p5482_06 and p5482_07 are separated by 4 nucleotides
p5482_05: p5482_05 - putative replication protein B (NCBI), at 2,747 to 3,787
_05
p5482_06: p5482_06 - mobilization protein A (NCBI), at 4,547 to 5,167
_06
p5482_07: p5482_07 - mobilization protein B (NCBI), at 5,172 to 7,421
_07
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.214 kb on + strand at 4.315 kb on + strand at 4.443 kb on + strand at 4.444 kb on - strand at 4.448 kb on - strand at 4.448 kb on - strand at 4.498 kb on + strand at 4.520 kb on - strand at 4.542 kb on + strand at 4.546 kb on + strand at 4.561 kb on - strand at 4.561 kb on - strand at 4.585 kb on + strand at 4.585 kb on + strand at 4.585 kb on + strand at 4.591 kb on + strand at 4.603 kb on + strand at 4.624 kb on + strand, within p5482_06 at 4.685 kb on + strand, within p5482_06 at 4.685 kb on + strand, within p5482_06 at 4.686 kb on - strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.804 kb on - strand, within p5482_06 at 4.880 kb on + strand, within p5482_06 at 4.880 kb on + strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.883 kb on - strand, within p5482_06 at 4.899 kb on + strand, within p5482_06 at 4.990 kb on - strand, within p5482_06 at 5.030 kb on - strand, within p5482_06 at 5.109 kb on + strand at 5.109 kb on + strand at 5.116 kb on + strand at 5.117 kb on - strand at 5.119 kb on + strand at 5.119 kb on + strand at 5.119 kb on + strand at 5.120 kb on - strand at 5.120 kb on - strand at 5.120 kb on - strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.157 kb on + strand at 5.158 kb on - strand at 5.165 kb on + strand at 5.165 kb on + strand at 5.165 kb on + strand at 5.166 kb on - strand at 5.166 kb on - strand at 5.166 kb on - strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.185 kb on + strand at 5.186 kb on - strand at 5.186 kb on - strand at 5.300 kb on + strand at 5.300 kb on + strand at 5.301 kb on - strand at 5.318 kb on - strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.322 kb on - strand at 5.322 kb on - strand at 5.330 kb on - strand at 5.358 kb on - strand at 5.440 kb on - strand, within p5482_07 at 5.450 kb on + strand, within p5482_07 at 5.450 kb on + strand, within p5482_07 at 5.507 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.568 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.572 kb on - strand, within p5482_07 at 5.599 kb on - strand, within p5482_07 at 5.599 kb on - strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.652 kb on - strand, within p5482_07 at 5.668 kb on + strand, within p5482_07 at 5.668 kb on + strand, within p5482_07 at 5.669 kb on - strand, within p5482_07 at 5.680 kb on + strand, within p5482_07 at 5.681 kb on - strand, within p5482_07 at 5.733 kb on - strand, within p5482_07 at 5.844 kb on + strand, within p5482_07 at 5.844 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.872 kb on + strand, within p5482_07 at 5.872 kb on + strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.991 kb on + strand, within p5482_07 at 5.991 kb on + strand, within p5482_07 at 5.992 kb on - strand, within p5482_07 at 5.992 kb on - strand, within p5482_07 at 6.103 kb on + strand, within p5482_07 at 6.104 kb on - strand, within p5482_07 at 6.104 kb on - strand, within p5482_07 at 6.113 kb on - strand, within p5482_07 at 6.138 kb on + strand, within p5482_07 at 6.139 kb on - strand, within p5482_07 at 6.139 kb on - strand, within p5482_07
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage4;Mouse5 remove 4,214 + +0.0 4,315 + -2.0 4,443 + -0.2 4,444 - -0.6 4,448 - -0.9 4,448 - -1.6 4,498 + +0.7 4,520 - -0.8 4,542 + +0.0 4,546 + -1.9 4,561 - -0.8 4,561 - -0.1 4,585 + -1.1 4,585 + -0.3 4,585 + -0.0 4,591 + +0.1 4,603 + +1.2 4,624 + p5482_06 0.12 -0.6 4,685 + p5482_06 0.22 -0.4 4,685 + p5482_06 0.22 -0.1 4,686 - p5482_06 0.22 -0.5 4,803 + p5482_06 0.41 -1.7 4,803 + p5482_06 0.41 -2.7 4,803 + p5482_06 0.41 +0.5 4,804 - p5482_06 0.41 +1.6 4,880 + p5482_06 0.54 +0.4 4,880 + p5482_06 0.54 -1.9 4,881 - p5482_06 0.54 +0.3 4,881 - p5482_06 0.54 +0.2 4,881 - p5482_06 0.54 -0.4 4,881 - p5482_06 0.54 -2.4 4,882 + p5482_06 0.54 +1.0 4,882 + p5482_06 0.54 +0.6 4,882 + p5482_06 0.54 -1.7 4,882 + p5482_06 0.54 -0.7 4,883 - p5482_06 0.54 -1.1 4,899 + p5482_06 0.57 +0.6 4,990 - p5482_06 0.71 -0.3 5,030 - p5482_06 0.78 -1.4 5,109 + -0.5 5,109 + +0.0 5,116 + -1.0 5,117 - -0.7 5,119 + -0.9 5,119 + +0.6 5,119 + +0.6 5,120 - +0.0 5,120 - +0.3 5,120 - +0.4 5,128 + -2.5 5,128 + +0.1 5,128 + -1.4 5,128 + +0.4 5,128 + -2.4 5,157 + -0.2 5,158 - -0.9 5,165 + -0.2 5,165 + +0.1 5,165 + -0.1 5,166 - -0.6 5,166 - -0.4 5,166 - +0.1 5,171 + +0.6 5,171 + +0.4 5,171 + -0.2 5,171 + -0.3 5,172 - -1.1 5,172 - +0.4 5,172 - +0.2 5,185 + +0.4 5,186 - -0.8 5,186 - -1.3 5,300 + +0.5 5,300 + -0.2 5,301 - -1.0 5,318 - -0.4 5,321 + -2.0 5,321 + +1.6 5,321 + +0.2 5,321 + +0.8 5,322 - -0.5 5,322 - +0.1 5,330 - -0.6 5,358 - -1.7 5,440 - p5482_07 0.12 +0.2 5,450 + p5482_07 0.12 -0.5 5,450 + p5482_07 0.12 -0.2 5,507 + p5482_07 0.15 -1.1 5,517 + p5482_07 0.15 -2.0 5,517 + p5482_07 0.15 +1.9 5,517 + p5482_07 0.15 +0.2 5,517 + p5482_07 0.15 -1.0 5,518 - p5482_07 0.15 -1.0 5,518 - p5482_07 0.15 -3.0 5,518 - p5482_07 0.15 +0.0 5,518 - p5482_07 0.15 -0.1 5,543 + p5482_07 0.16 -0.0 5,543 + p5482_07 0.16 -0.2 5,543 + p5482_07 0.16 -1.0 5,543 + p5482_07 0.16 +0.1 5,543 + p5482_07 0.16 +0.2 5,568 + p5482_07 0.18 -2.5 5,571 + p5482_07 0.18 -1.1 5,571 + p5482_07 0.18 +0.5 5,571 + p5482_07 0.18 -0.4 5,572 - p5482_07 0.18 -0.4 5,599 - p5482_07 0.19 -0.1 5,599 - p5482_07 0.19 -0.4 5,651 + p5482_07 0.21 -0.8 5,651 + p5482_07 0.21 +0.1 5,651 + p5482_07 0.21 +0.2 5,652 - p5482_07 0.21 -1.1 5,668 + p5482_07 0.22 +0.3 5,668 + p5482_07 0.22 -1.0 5,669 - p5482_07 0.22 -1.0 5,680 + p5482_07 0.23 +0.4 5,681 - p5482_07 0.23 -1.3 5,733 - p5482_07 0.25 -0.7 5,844 + p5482_07 0.30 +0.6 5,844 + p5482_07 0.30 -0.6 5,868 + p5482_07 0.31 -1.5 5,868 + p5482_07 0.31 -1.1 5,868 + p5482_07 0.31 -0.5 5,868 + p5482_07 0.31 +1.2 5,868 + p5482_07 0.31 +0.6 5,868 + p5482_07 0.31 -0.4 5,868 + p5482_07 0.31 -0.5 5,868 + p5482_07 0.31 -0.6 5,868 + p5482_07 0.31 -2.0 5,869 - p5482_07 0.31 -0.2 5,869 - p5482_07 0.31 -0.4 5,869 - p5482_07 0.31 +0.6 5,869 - p5482_07 0.31 -0.7 5,869 - p5482_07 0.31 -1.7 5,869 - p5482_07 0.31 +0.6 5,869 - p5482_07 0.31 -0.7 5,872 + p5482_07 0.31 +1.3 5,872 + p5482_07 0.31 -0.2 5,873 - p5482_07 0.31 -0.4 5,873 - p5482_07 0.31 -1.4 5,873 - p5482_07 0.31 -2.0 5,991 + p5482_07 0.36 +0.4 5,991 + p5482_07 0.36 -0.3 5,992 - p5482_07 0.36 -0.1 5,992 - p5482_07 0.36 -0.5 6,103 + p5482_07 0.41 +0.3 6,104 - p5482_07 0.41 -0.7 6,104 - p5482_07 0.41 -1.4 6,113 - p5482_07 0.42 -0.9 6,138 + p5482_07 0.43 -1.7 6,139 - p5482_07 0.43 -0.9 6,139 - p5482_07 0.43 +1.2
Or see this region's nucleotide sequence