Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_18

Experiment: Post-colonization (Day 8) - Cage7;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage7;Mouse2
16,025	-		p5482_16	0.89	-0.9
16,139	+				-0.4
16,140	-				-2.9
16,140	-				+0.6
16,140	-				-0.5
16,234	-				-1.4
16,281	-				-0.9
16,324	-				-0.9
16,424	-				-0.9
16,487	-				-1.4
16,522	-				-0.8
16,522	-				-0.6
16,522	-				-0.4
16,522	-				+1.2
16,522	-				-0.9
16,543	-				-1.1
16,610	+				-0.8
16,630	-				+0.6
16,630	-				-0.8
16,640	-				-1.5
16,657	+				-6.4
16,666	+				-2.2
16,667	-				-0.8
16,686	-				-0.8
16,686	-				-1.2
16,686	-				-1.3
16,689	+				-0.8
16,689	+				-1.9
16,703	+		p5482_17	0.12	-1.9
16,703	+		p5482_17	0.12	-1.4
16,816	+		p5482_17	0.66	-1.5
16,816	+		p5482_17	0.66	-0.4
16,816	+		p5482_17	0.66	-3.4
16,816	+		p5482_17	0.66	-1.8
16,816	+		p5482_17	0.66	-0.9
16,816	+		p5482_17	0.66	-2.4
16,816	+		p5482_17	0.66	-0.9
16,817	-		p5482_17	0.66	-0.7
16,869	+				-3.9
16,870	-				+0.6
16,886	-				-0.9
16,890	+				+0.6
16,898	-				-0.8
16,909	-				+0.3
16,999	+		p5482_18	0.14	-0.7
16,999	+		p5482_18	0.14	-1.7
17,000	-		p5482_18	0.14	-0.0
17,001	+		p5482_18	0.15	-2.4
17,019	+		p5482_18	0.17	-0.4
17,047	+		p5482_18	0.21	-2.3
17,047	+		p5482_18	0.21	-2.2
17,048	-		p5482_18	0.21	-2.2
17,085	+		p5482_18	0.26	-0.1
17,085	+		p5482_18	0.26	-1.4
17,086	-		p5482_18	0.27	-0.7
17,086	-		p5482_18	0.27	-2.4
17,145	-		p5482_18	0.35	-1.4
17,231	+		p5482_18	0.47	-0.4
17,231	+		p5482_18	0.47	-1.8
17,231	+		p5482_18	0.47	-1.4
17,231	+		p5482_18	0.47	-2.4
17,231	+		p5482_18	0.47	-0.9
17,232	-		p5482_18	0.47	-2.2
17,232	-		p5482_18	0.47	-0.7
17,232	-		p5482_18	0.47	-1.2
17,232	-				+1.6
17,232	-		p5482_18	0.47	-1.3
17,232	-		p5482_18	0.47	+0.4
17,232	-		p5482_18	0.47	-1.2
17,232	-		p5482_18	0.47	-0.9
17,232	-		p5482_18	0.47	-2.4
17,308	-		p5482_18	0.58	-1.4
17,308	-		p5482_18	0.58	-1.8
17,308	-		p5482_18	0.58	-1.4
17,313	+		p5482_18	0.59	+1.1
17,313	+		p5482_18	0.59	-0.4
17,313	+		p5482_18	0.59	-1.3
17,314	-		p5482_18	0.59	-4.1
17,314	-		p5482_18	0.59	-2.4
17,314	-		p5482_18	0.59	-1.4
17,339	-		p5482_18	0.62	-1.7
17,339	-		p5482_18	0.62	-1.0
17,339	-		p5482_18	0.62	-0.5
17,339	-		p5482_18	0.62	+0.1
17,367	-		p5482_18	0.66	-1.4
17,438	+		p5482_18	0.76	-3.1
17,440	+		p5482_18	0.77	-0.7
17,441	-		p5482_18	0.77	-1.7
17,441	-		p5482_18	0.77	-0.7
17,441	-		p5482_18	0.77	+1.4
17,441	-		p5482_18	0.77	-0.4
17,583	+				-2.8
17,583	+				-2.5
17,583	+				-0.9
17,584	-				-1.4
17,584	-				-0.7
17,584	-				-0.8
17,584	-				-2.3
17,584	-				-0.6
17,584	-				-2.2
17,590	-				-2.5
17,590	-				-0.9
17,596	-				-1.6
17,610	-				-0.8
17,629	+				-1.7
17,629	+				-0.7
17,670	+		p5482_19	0.12	-2.1
17,670	+		p5482_19	0.12	-2.8
17,671	-		p5482_19	0.12	-2.4
17,671	-		p5482_19	0.12	+0.1
17,671	-		p5482_19	0.12	-0.9
17,671	-		p5482_19	0.12	-0.5
17,671	-		p5482_19	0.12	-2.4
17,685	+		p5482_19	0.15	-0.8
17,685	+		p5482_19	0.15	-1.2
17,686	-		p5482_19	0.15	-2.5
17,687	+		p5482_19	0.15	-1.0
17,687	+		p5482_19	0.15	-0.6
17,688	-		p5482_19	0.15	-2.5
17,706	+		p5482_19	0.19	-1.9
17,707	-		p5482_19	0.19	-2.4
17,709	-		p5482_19	0.20	+0.4
17,709	-		p5482_19	0.20	-2.1
17,757	+		p5482_19	0.29	-1.5
17,757	+		p5482_19	0.29	-1.7
17,757	+		p5482_19	0.29	-2.4
17,757	+		p5482_19	0.29	-1.4
17,758	-		p5482_19	0.29	-0.4
17,786	+		p5482_19	0.35	-1.6
17,787	-		p5482_19	0.35	-2.6
17,787	-		p5482_19	0.35	-0.2
17,787	-		p5482_19	0.35	-2.0
17,787	-		p5482_19	0.35	-2.4
17,787	-		p5482_19	0.35	-0.7
17,853	+		p5482_19	0.48	+0.1
17,854	-		p5482_19	0.48	-0.2
17,856	+		p5482_19	0.49	-2.2
17,856	+		p5482_19	0.49	-1.5
17,856	+		p5482_19	0.49	-1.3
17,857	-		p5482_19	0.49	+0.6
17,946	+		p5482_19	0.66	-0.8
17,947	-		p5482_19	0.66	-2.5
17,947	-		p5482_19	0.66	-0.9
17,947	-				-0.4
17,979	+		p5482_19	0.73	-2.5
17,979	+		p5482_19	0.73	+0.6
17,980	-		p5482_19	0.73	-1.1
18,011	-		p5482_19	0.79	-1.8
18,059	+		p5482_19	0.89	-0.9
18,059	+		p5482_19	0.89	-2.0
18,060	-		p5482_19	0.89	-1.0
18,077	+				-2.0
18,077	+				-1.8
18,081	+				-0.4
18,109	-				-0.7
18,112	+				-1.1
18,113	-				-1.4
18,113	-				-0.1
18,115	-				+0.4
18,121	-				-0.7
18,124	+				-1.0
18,134	+				+0.4
18,135	-				-2.0
18,144	+				-1.8
18,145	-				-1.0
18,145	-				-1.2
18,150	+				-0.2
18,151	-				-0.8
18,151	-				-1.4
18,237	+		p5482_20	0.22	-0.1
18,237	+		p5482_20	0.22	+1.3
18,237	+		p5482_20	0.22	+0.0
18,237	+		p5482_20	0.22	-2.4
18,237	+		p5482_20	0.22	-1.4
18,237	+		p5482_20	0.22	+0.1
18,238	-		p5482_20	0.23	-1.4
18,238	-		p5482_20	0.23	-0.7
18,238	-		p5482_20	0.23	-1.0
18,238	-		p5482_20	0.23	-0.5
18,245	-		p5482_20	0.24	-1.1
18,281	+		p5482_20	0.32	-0.4
18,281	+		p5482_20	0.32	-1.5
18,281	+		p5482_20	0.32	+0.0
18,281	+		p5482_20	0.32	-0.4
18,282	-		p5482_20	0.32	-0.4
18,295	+		p5482_20	0.35	-0.8
18,308	+		p5482_20	0.38	+0.4
18,362	-		p5482_20	0.50	-0.2
18,362	-		p5482_20	0.50	-2.5
18,397	+		p5482_20	0.57	-2.2
18,556	+				-0.0
18,556	+				-1.1
18,556	+				+0.4
18,556	+				-0.7
18,557	-				-0.7
18,557	-				-0.8
18,557	-				-1.2
18,560	+				-0.2
18,560	+				-1.9
18,560	+				-0.9
18,572	+				-1.1
18,579	+				-1.7
18,582	+				-1.4
18,583	-				-1.2
18,583	-				-1.2
18,583	-				+0.8
18,584	+				+1.2
18,585	-				-1.3
18,585	-				+1.0