Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2925

Experiment: Post-colonization (Day 8) - Cage1;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage1;Mouse2
3,674,920	-		BT2924	0.76	-1.4
3,674,920	-		BT2924	0.76	-0.6
3,674,932	-		BT2924	0.76	-2.1
3,674,982	+		BT2924	0.79	-1.7
3,675,000	+		BT2924	0.80	-1.4
3,675,001	-		BT2924	0.80	-2.3
3,675,001	-		BT2924	0.80	-0.5
3,675,012	+		BT2924	0.80	-0.9
3,675,012	+		BT2924	0.80	-1.1
3,675,012	+		BT2924	0.80	-1.9
3,675,013	-		BT2924	0.80	-1.7
3,675,013	-		BT2924	0.80	-1.9
3,675,013	-		BT2924	0.80	+0.7
3,675,013	-		BT2924	0.80	+0.4
3,675,078	+		BT2924	0.83	+1.4
3,675,078	+		BT2924	0.83	-1.7
3,675,078	+		BT2924	0.83	-0.1
3,675,134	-		BT2924	0.86	-0.7
3,675,134	-		BT2924	0.86	+2.2
3,675,138	+		BT2924	0.86	+2.1
3,675,139	-		BT2924	0.86	+1.3
3,675,178	+		BT2924	0.88	-0.9
3,675,242	-				-0.7
3,675,337	+				-1.9
3,675,339	+				-1.9
3,675,354	+				-0.2
3,675,355	-				-0.7
3,675,358	+				-1.4
3,675,385	+				-0.8
3,675,385	+				-1.3
3,675,385	+				-2.0
3,675,386	-				-0.3
3,675,386	-				-2.2
3,675,415	+				-1.4
3,675,416	-				-1.4
3,675,421	-				-0.8
3,675,421	-				-2.7
3,675,421	-				-1.6
3,675,421	-				-0.7
3,675,425	+				-0.9
3,675,425	+				+0.8
3,675,425	+				-1.1
3,675,426	-				-0.8
3,675,447	-				+0.8
3,675,551	+				-0.9
3,675,552	-				+0.1
3,675,552	-				+0.1
3,675,552	-				-1.4
3,675,619	+				-1.1
3,675,620	-				-2.1
3,675,630	+				-0.7
3,675,631	-				-2.1
3,675,694	+				-0.1
3,675,694	+				-0.8
3,675,696	+				-0.2
3,675,706	+				+0.9
3,675,706	+				-0.4
3,675,707	-				-0.5
3,675,707	-				-0.5
3,675,725	-				+0.5
3,675,763	-				-2.1
3,675,766	+				+0.2
3,675,812	-				-1.2
3,675,839	-				-1.3
3,675,897	-		BT2925	0.15	-1.9
3,675,897	-		BT2925	0.15	-0.6
3,675,922	+		BT2925	0.19	-2.1
3,675,943	-		BT2925	0.23	-1.3
3,675,945	+		BT2925	0.23	-0.1
3,675,945	+		BT2925	0.23	-3.7
3,675,945	+		BT2925	0.23	-2.1
3,675,946	-		BT2925	0.23	-1.2
3,675,946	-		BT2925	0.23	-1.5
3,675,946	-		BT2925	0.23	-2.4
3,675,948	-		BT2925	0.24	-1.9
3,675,948	-		BT2925	0.24	-2.6
3,675,948	-		BT2925	0.24	-1.3
3,675,961	+		BT2925	0.26	+0.1
3,676,010	-		BT2925	0.34	-1.7
3,676,010	-		BT2925	0.34	+0.2
3,676,027	+		BT2925	0.37	-0.7
3,676,035	-		BT2925	0.38	-2.1
3,676,100	-		BT2925	0.49	-2.0
3,676,100	-		BT2925	0.49	-1.0
3,676,104	+		BT2925	0.49	-1.0
3,676,104	+		BT2925	0.49	-1.6
3,676,105	-		BT2925	0.50	-1.9
3,676,110	+		BT2925	0.50	-1.9
3,676,120	+		BT2925	0.52	-0.6
3,676,120	+		BT2925	0.52	-1.1
3,676,234	+		BT2925	0.71	-1.4
3,676,244	+		BT2925	0.73	-1.2
3,676,244	+		BT2925	0.73	-0.1
3,676,244	+		BT2925	0.73	-1.9
3,676,282	+		BT2925	0.79	-1.8
3,676,283	-		BT2925	0.79	-2.0
3,676,295	-		BT2925	0.81	-0.7
3,676,324	+		BT2925	0.86	+0.9
3,676,356	+				-0.9
3,676,357	-				-0.7
3,676,383	+				+0.5
3,676,412	+				-0.1
3,676,413	-				-1.9
3,676,422	+				-1.9
3,676,423	-				-0.8
3,676,457	-				-1.3
3,676,461	+				-0.8
3,676,464	-				-1.5
3,676,464	-				-0.5
3,676,471	+				+1.3
3,676,477	+				-0.8
3,676,484	-				+0.3
3,676,486	-				-3.0
3,676,487	+				-1.0
3,676,503	-				-0.3
3,676,511	+				+0.0
3,676,526	-				-0.6
3,676,543	-				+0.3
3,676,544	-				+0.9
3,676,556	+				-1.4
3,676,556	+				-1.1
3,676,556	+				-0.8
3,676,579	+				-0.1
3,676,581	+				-0.2
3,676,581	+				+1.2
3,676,637	-				+0.3
3,676,648	+				-1.0
3,676,649	-				-1.1
3,676,683	+				+0.6
3,676,684	-				-0.2
3,676,684	-				-1.9
3,676,685	+				-2.1
3,676,685	+				-0.7
3,676,686	-				-0.5
3,676,686	-				-1.0
3,676,686	-				-1.6
3,676,692	+				-0.7
3,676,695	-				-1.1
3,676,696	+				-1.4
3,676,727	-				-0.1
3,676,740	+		BT2926	0.11	-0.9
3,676,740	+		BT2926	0.11	-0.9
3,676,747	+		BT2926	0.11	-0.5
3,676,777	+		BT2926	0.14	-1.5
3,676,777	+		BT2926	0.14	-2.5
3,676,777	+		BT2926	0.14	-0.7
3,676,777	+		BT2926	0.14	-0.9
3,676,778	-		BT2926	0.14	-0.4
3,676,795	+		BT2926	0.16	-0.9
3,676,798	+		BT2926	0.16	-1.8
3,676,799	-		BT2926	0.16	-1.5
3,676,801	+		BT2926	0.16	-2.7
3,676,802	-		BT2926	0.16	-0.3
3,676,831	+		BT2926	0.19	-1.1
3,676,842	+		BT2926	0.20	-0.8
3,676,857	+		BT2926	0.21	-1.7
3,676,873	+		BT2926	0.23	-0.1
3,676,874	-				-1.7
3,676,885	+		BT2926	0.24	-2.1
3,676,912	-		BT2926	0.26	-1.8
3,676,912	-		BT2926	0.26	+0.1
3,676,944	+		BT2926	0.29	-0.3
3,676,984	+		BT2926	0.33	+1.5
3,676,985	-		BT2926	0.33	-1.1
3,676,994	+		BT2926	0.34	-1.9
3,676,995	-		BT2926	0.34	-0.4
3,676,995	-		BT2926	0.34	-1.3
3,677,039	-		BT2926	0.38	-0.1
3,677,039	-		BT2926	0.38	-1.2
3,677,044	+		BT2926	0.38	+0.9
3,677,044	+		BT2926	0.38	+0.0
3,677,052	-		BT2926	0.39	+0.5
3,677,095	+		BT2926	0.43	-0.5
3,677,096	-		BT2926	0.43	-0.1
3,677,108	-		BT2926	0.44	-1.4
3,677,108	-		BT2926	0.44	-0.9
3,677,108	-		BT2926	0.44	-0.4
3,677,108	-		BT2926	0.44	-2.2
3,677,108	-		BT2926	0.44	+0.1
3,677,123	-		BT2926	0.45	-0.4
3,677,171	+		BT2926	0.49	+0.1
3,677,171	+		BT2926	0.49	-1.4
3,677,171	+		BT2926	0.49	-0.7
3,677,221	+		BT2926	0.54	-2.2
3,677,227	-		BT2926	0.54	+0.1
3,677,231	+		BT2926	0.55	+0.2
3,677,231	+		BT2926	0.55	-1.4
3,677,231	+		BT2926	0.55	-1.1
3,677,266	-		BT2926	0.58	+0.4
3,677,306	+		BT2926	0.61	-1.1
3,677,307	-		BT2926	0.61	-1.4
3,677,310	+		BT2926	0.62	-1.0
3,677,310	+		BT2926	0.62	+0.2
3,677,310	+		BT2926	0.62	-0.7
3,677,311	-		BT2926	0.62	-2.2
3,677,312	+		BT2926	0.62	+0.3
3,677,350	+		BT2926	0.65	-0.7
3,677,350	+		BT2926	0.65	+0.3
3,677,351	-		BT2926	0.65	-1.4
3,677,351	-		BT2926	0.65	-0.4
3,677,366	+		BT2926	0.67	-0.2
3,677,373	-		BT2926	0.67	-0.9