Experiment: Post-colonization (Day 6) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0304 and BT0305 are separated by 3 nucleotides BT0305 and BT0306 overlap by 1 nucleotides
BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107
BT0304
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
Position (kb) 364
365
366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.277 kb on - strand, within BT0304 at 363.290 kb on - strand, within BT0304 at 363.341 kb on - strand, within BT0304 at 363.442 kb on - strand, within BT0304 at 363.505 kb on - strand, within BT0304 at 363.509 kb on + strand, within BT0304 at 363.630 kb on - strand, within BT0304 at 363.649 kb on - strand, within BT0304 at 363.775 kb on - strand, within BT0304 at 363.861 kb on + strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.867 kb on + strand, within BT0304 at 363.877 kb on - strand, within BT0304 at 363.886 kb on - strand, within BT0304 at 363.903 kb on + strand, within BT0304 at 364.130 kb on + strand at 364.343 kb on - strand at 364.343 kb on - strand at 364.401 kb on - strand at 364.491 kb on + strand, within BT0305 at 364.524 kb on - strand, within BT0305 at 364.546 kb on - strand, within BT0305 at 364.650 kb on + strand, within BT0305 at 364.660 kb on + strand, within BT0305 at 364.661 kb on - strand, within BT0305 at 364.665 kb on + strand, within BT0305 at 364.770 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 365.019 kb on - strand, within BT0305 at 365.108 kb on - strand, within BT0305 at 365.136 kb on + strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.286 kb on + strand, within BT0305 at 365.368 kb on - strand, within BT0305 at 365.370 kb on + strand, within BT0305 at 365.395 kb on + strand, within BT0305 at 365.532 kb on + strand, within BT0305 at 365.681 kb on - strand, within BT0305 at 365.754 kb on + strand, within BT0305 at 365.817 kb on + strand, within BT0305 at 365.891 kb on - strand, within BT0305 at 365.911 kb on - strand, within BT0305 at 366.082 kb on + strand, within BT0305 at 366.090 kb on + strand, within BT0305 at 366.202 kb on + strand, within BT0305 at 366.219 kb on + strand, within BT0305 at 366.394 kb on + strand, within BT0305 at 366.395 kb on - strand, within BT0305 at 366.401 kb on + strand, within BT0305 at 366.406 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.487 kb on - strand, within BT0305 at 366.556 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.887 kb on + strand, within BT0305 at 367.180 kb on - strand at 367.231 kb on + strand at 367.232 kb on - strand at 367.235 kb on + strand at 367.236 kb on - strand at 367.241 kb on + strand at 367.291 kb on - strand at 367.313 kb on - strand at 367.405 kb on + strand, within BT0306 at 367.433 kb on + strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 6) - Cage6;Mouse1 remove 363,277 - BT0304 0.33 -0.3 363,290 - BT0304 0.34 -1.6 363,341 - BT0304 0.38 +0.0 363,442 - BT0304 0.46 +0.2 363,505 - BT0304 0.51 -1.7 363,509 + BT0304 0.52 -2.8 363,630 - BT0304 0.61 +1.0 363,649 - BT0304 0.63 +1.0 363,775 - BT0304 0.73 -2.2 363,861 + BT0304 0.80 -1.0 363,862 - BT0304 0.80 -2.0 363,862 - BT0304 0.80 -0.5 363,862 - BT0304 0.80 +0.0 363,867 + BT0304 0.81 -1.3 363,877 - BT0304 0.81 +0.3 363,886 - BT0304 0.82 -0.7 363,903 + BT0304 0.83 +0.0 364,130 + +0.1 364,343 - -1.5 364,343 - -2.0 364,401 - +0.0 364,491 + BT0305 0.12 +0.2 364,524 - BT0305 0.13 -1.5 364,546 - BT0305 0.14 -1.6 364,650 + BT0305 0.17 +2.0 364,660 + BT0305 0.18 -1.0 364,661 - BT0305 0.18 -2.5 364,665 + BT0305 0.18 -1.9 364,770 - BT0305 0.21 -1.3 364,988 - BT0305 0.28 -1.3 364,988 - BT0305 0.28 +0.2 365,019 - BT0305 0.29 -2.5 365,108 - BT0305 0.32 -2.5 365,136 + BT0305 0.33 -1.7 365,233 - BT0305 0.36 -1.1 365,233 - BT0305 0.36 -0.2 365,233 - BT0305 0.36 -1.8 365,286 + BT0305 0.38 -2.3 365,368 - BT0305 0.40 -2.3 365,370 + BT0305 0.41 -1.7 365,395 + BT0305 0.41 -1.0 365,532 + BT0305 0.46 -1.0 365,681 - BT0305 0.51 -1.6 365,754 + BT0305 0.53 +0.6 365,817 + BT0305 0.55 -1.2 365,891 - BT0305 0.57 -0.3 365,911 - BT0305 0.58 -1.6 366,082 + BT0305 0.63 +1.0 366,090 + BT0305 0.64 -0.6 366,202 + BT0305 0.67 -2.3 366,219 + BT0305 0.68 -3.4 366,394 + BT0305 0.74 -2.1 366,395 - BT0305 0.74 -1.5 366,401 + BT0305 0.74 +1.2 366,406 - BT0305 0.74 -0.7 366,481 - BT0305 0.76 -3.0 366,481 - BT0305 0.76 -0.7 366,481 - BT0305 0.76 -0.7 366,481 - BT0305 0.76 -0.6 366,487 - BT0305 0.77 -0.8 366,556 - BT0305 0.79 -1.6 366,795 - BT0305 0.86 -1.3 366,795 - BT0305 0.86 -1.3 366,887 + BT0305 0.89 +1.0 367,180 - -0.3 367,231 + -0.6 367,232 - -0.4 367,235 + -2.8 367,236 - -1.9 367,241 + +0.6 367,291 - -0.2 367,313 - -0.3 367,405 + BT0306 0.14 -1.3 367,433 + BT0306 0.16 -1.0 367,729 - BT0306 0.37 -1.1 367,729 - BT0306 0.37 -0.8 367,732 - BT0306 0.38 -0.8 367,780 + BT0306 0.41 -1.5 367,852 - BT0306 0.46 -1.2 367,868 - BT0306 0.48 +0.0 368,060 - BT0306 0.61 -2.2
Or see this region's nucleotide sequence