Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2268

Experiment: Post-colonization (Day 6) - Cage3;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 6) - Cage3;Mouse2
2,846,089	+		BT2267	0.56	-0.6
2,846,177	+		BT2267	0.64	-1.1
2,846,191	+		BT2267	0.65	-0.5
2,846,210	+		BT2267	0.66	+0.3
2,846,210	+		BT2267	0.66	-0.8
2,846,395	+		BT2267	0.82	-1.0
2,846,396	-		BT2267	0.82	-0.8
2,846,404	-		BT2267	0.83	-0.8
2,846,406	-		BT2267	0.83	-1.0
2,846,406	-		BT2267	0.83	-0.3
2,846,445	-		BT2267	0.86	+1.0
2,846,484	+		BT2267	0.90	-1.2
2,846,523	+				+1.4
2,846,523	+				-2.4
2,846,531	+				+0.0
2,846,537	+				-1.3
2,846,629	-				-0.7
2,846,631	+				-1.0
2,846,631	+				-1.1
2,846,632	-				-2.3
2,846,682	+				-1.1
2,847,017	-				+0.0
2,847,059	-				+0.0
2,847,105	+				-3.7
2,847,106	-				-4.4
2,847,106	-				-2.2
2,847,112	-				+1.0
2,847,115	-				-3.5
2,847,196	-				-1.0
2,847,205	+				-2.8
2,847,205	+				-1.6
2,847,206	-				-1.6
2,847,215	-				-2.4
2,847,215	-				-5.2
2,847,287	+				-0.9
2,847,337	+				-1.3
2,847,373	+				-1.1
2,847,387	-		BT2268	0.10	-0.7
2,847,538	+		BT2268	0.15	+0.0
2,847,539	-		BT2268	0.15	-0.1
2,847,549	+		BT2268	0.15	-1.0
2,847,597	-		BT2268	0.17	+0.3
2,847,602	-		BT2268	0.17	+0.4
2,847,602	-		BT2268	0.17	+1.4
2,847,602	-		BT2268	0.17	-0.1
2,847,616	-		BT2268	0.18	-3.0
2,847,642	-		BT2268	0.18	-0.6
2,847,649	+		BT2268	0.19	+0.0
2,847,664	-		BT2268	0.19	-0.9
2,847,735	-		BT2268	0.21	-0.1
2,847,760	+		BT2268	0.22	+0.4
2,847,761	-		BT2268	0.22	-0.8
2,847,809	+		BT2268	0.24	+0.4
2,847,844	-		BT2268	0.25	-1.1
2,847,884	+		BT2268	0.26	-0.4
2,847,921	-		BT2268	0.27	-2.0
2,847,934	+		BT2268	0.28	-2.6
2,847,935	-		BT2268	0.28	-0.2
2,847,976	+		BT2268	0.29	-0.5
2,847,977	-		BT2268	0.29	-1.0
2,848,007	-		BT2268	0.30	-0.9
2,848,022	-		BT2268	0.31	+1.0
2,848,101	+		BT2268	0.33	-0.9
2,848,101	+		BT2268	0.33	-2.1
2,848,106	-		BT2268	0.33	-3.2
2,848,112	+		BT2268	0.34	-1.3
2,848,137	-		BT2268	0.35	-1.0
2,848,156	+		BT2268	0.35	-0.4
2,848,169	-		BT2268	0.36	-1.3
2,848,196	-		BT2268	0.36	-1.8
2,848,232	-		BT2268	0.38	-1.0
2,848,322	-		BT2268	0.41	-0.9
2,848,345	-		BT2268	0.41	+0.0
2,848,391	+		BT2268	0.43	-2.0
2,848,392	-		BT2268	0.43	-1.1
2,848,392	-		BT2268	0.43	-1.8
2,848,392	-		BT2268	0.43	-0.6
2,848,396	+		BT2268	0.43	-1.0
2,848,415	-		BT2268	0.44	-2.9
2,848,421	-		BT2268	0.44	-0.6
2,848,421	-		BT2268	0.44	-1.3
2,848,441	-		BT2268	0.44	-1.3
2,848,447	+		BT2268	0.45	-0.7
2,848,448	-		BT2268	0.45	-1.2
2,848,515	+				+0.0
2,848,534	+		BT2268	0.47	-0.4
2,848,546	+		BT2268	0.48	-3.4
2,848,553	-		BT2268	0.48	-1.0
2,848,568	+		BT2268	0.48	-0.7
2,848,568	+		BT2268	0.48	-0.7
2,848,568	+		BT2268	0.48	+2.0
2,848,569	-		BT2268	0.49	-0.4
2,848,572	+		BT2268	0.49	-2.1
2,848,573	-		BT2268	0.49	-1.9
2,848,573	-		BT2268	0.49	-1.4
2,848,589	+		BT2268	0.49	-0.6
2,848,647	-		BT2268	0.51	-2.6
2,848,669	+		BT2268	0.52	-1.8
2,848,670	-		BT2268	0.52	-1.8
2,848,681	+		BT2268	0.52	-4.4
2,848,687	-		BT2268	0.52	-1.2
2,848,692	-		BT2268	0.53	+0.8
2,848,706	-		BT2268	0.53	-1.7
2,848,711	+		BT2268	0.53	-0.3
2,848,711	+		BT2268	0.53	-1.4
2,848,773	+		BT2268	0.55	-0.9
2,848,774	-		BT2268	0.55	-2.7
2,848,774	-		BT2268	0.55	-1.2
2,848,890	-		BT2268	0.59	-0.5
2,848,890	-		BT2268	0.59	-1.5
2,848,896	-		BT2268	0.59	-2.9
2,848,907	+		BT2268	0.59	-1.1
2,848,908	-		BT2268	0.60	-0.8
2,849,029	+		BT2268	0.63	-1.8
2,849,030	-		BT2268	0.63	-2.4
2,849,037	+		BT2268	0.64	-3.4
2,849,042	-		BT2268	0.64	-1.5
2,849,066	+		BT2268	0.65	-2.4
2,849,067	-		BT2268	0.65	-0.6
2,849,067	-		BT2268	0.65	-0.7
2,849,071	+		BT2268	0.65	-1.5
2,849,096	+		BT2268	0.66	-1.6
2,849,105	+		BT2268	0.66	-2.7
2,849,106	-		BT2268	0.66	-0.1
2,849,106	-		BT2268	0.66	+0.8
2,849,106	-		BT2268	0.66	-1.2
2,849,117	+		BT2268	0.66	-1.6
2,849,117	+		BT2268	0.66	-1.8
2,849,120	-		BT2268	0.66	-1.0
2,849,150	-		BT2268	0.67	-1.8
2,849,181	+		BT2268	0.68	-2.0
2,849,181	+		BT2268	0.68	-0.3
2,849,227	+		BT2268	0.70	-2.8
2,849,232	-		BT2268	0.70	+0.4
2,849,296	-		BT2268	0.72	-1.4
2,849,300	-		BT2268	0.72	-1.0
2,849,383	+		BT2268	0.75	-1.9
2,849,383	+		BT2268	0.75	-1.3
2,849,384	-		BT2268	0.75	-1.6
2,849,407	+		BT2268	0.76	-1.4
2,849,408	-		BT2268	0.76	+0.6
2,849,452	-		BT2268	0.77	-0.6
2,849,452	-		BT2268	0.77	-1.4
2,849,529	-		BT2268	0.80	+0.3
2,849,529	-		BT2268	0.80	-0.6
2,849,530	+		BT2268	0.80	-1.7
2,849,531	-		BT2268	0.80	-0.4
2,849,537	+		BT2268	0.80	+1.8
2,849,559	+		BT2268	0.81	-2.4
2,849,593	-		BT2268	0.82	-1.3
2,849,655	+		BT2268	0.84	-3.1
2,849,705	+		BT2268	0.85	-1.8
2,849,738	+		BT2268	0.86	-0.9
2,849,738	+		BT2268	0.86	+1.4
2,849,841	-		BT2268	0.90	+1.0
2,849,865	+				-0.3
2,849,866	-				+1.0
2,849,881	+				-0.8
2,849,882	-				+1.3
2,849,882	-				-1.8
2,849,882	-				-3.1
2,849,882	-				-1.1
2,849,886	-				-0.6
2,849,944	+				-1.4
2,849,945	-				+1.4
2,849,967	+				-1.8
2,849,968	-				-2.0
2,849,968	-				-0.4
2,849,968	-				-4.0
2,849,972	+				-0.6
2,849,974	+				-1.0
2,849,975	-				-1.3
2,849,975	-				-0.6
2,849,975	-				+0.0
2,850,129	+				-2.3
2,850,129	+				+1.6
2,850,150	+				-1.7
2,850,150	+				-2.8
2,850,151	-				-1.3
2,850,172	+				-1.6
2,850,231	-				-1.0
2,850,231	-				-0.6
2,850,318	+		BT2269	0.10	-1.0
2,850,319	-		BT2269	0.10	-1.6
2,850,319	-		BT2269	0.10	-0.2
2,850,339	-		BT2269	0.12	-2.1
2,850,354	-		BT2269	0.13	-0.6
2,850,370	-		BT2269	0.14	-1.8
2,850,370	-		BT2269	0.14	-0.6
2,850,435	-		BT2269	0.19	-2.1
2,850,451	+		BT2269	0.20	+0.0
2,850,451	+		BT2269	0.20	-1.3
2,850,451	+		BT2269	0.20	-1.4
2,850,451	+		BT2269	0.20	-3.0
2,850,451	+		BT2269	0.20	-0.5
2,850,451	+		BT2269	0.20	-0.9
2,850,452	-		BT2269	0.20	-1.0
2,850,452	-		BT2269	0.20	-1.3
2,850,452	-		BT2269	0.20	-1.7
2,850,452	-		BT2269	0.20	-1.4
2,850,452	-		BT2269	0.20	-3.0
2,850,453	+		BT2269	0.20	-0.6
2,850,453	+		BT2269	0.20	-0.8
2,850,453	+		BT2269	0.20	-1.3
2,850,453	+		BT2269	0.20	+0.0
2,850,454	-		BT2269	0.20	-1.0
2,850,454	-		BT2269	0.20	+0.0
2,850,460	-		BT2269	0.20	-1.9
2,850,492	+		BT2269	0.23	-1.4
2,850,551	+		BT2269	0.27	+0.7
2,850,663	-		BT2269	0.35	-1.9
2,850,663	-		BT2269	0.35	-1.5
2,850,692	-		BT2269	0.37	-2.1
2,850,723	-		BT2269	0.39	-2.1
2,850,723	-		BT2269	0.39	-1.2
2,850,723	-		BT2269	0.39	-0.6
2,850,738	-		BT2269	0.40	-1.4
2,850,740	+		BT2269	0.40	-1.0
2,850,740	+		BT2269	0.40	+0.0
2,850,763	+		BT2269	0.42	-1.0
2,850,763	+		BT2269	0.42	-1.2
2,850,764	-		BT2269	0.42	-1.4
2,850,764	-		BT2269	0.42	-0.7
2,850,817	+		BT2269	0.46	-1.0
2,850,870	+		BT2269	0.49	-0.9
2,850,871	-		BT2269	0.49	-3.1
2,850,876	+		BT2269	0.50	-1.2
2,850,876	+		BT2269	0.50	-1.0
2,850,877	-		BT2269	0.50	-1.6
2,850,894	-		BT2269	0.51	-0.8
2,850,919	+		BT2269	0.53	-1.0
2,850,937	-		BT2269	0.54	-0.6
2,850,945	+		BT2269	0.55	-0.2
2,850,971	-		BT2269	0.57	-1.7
2,851,016	+		BT2269	0.60	-0.5
2,851,016	+		BT2269	0.60	-1.3
2,851,017	-		BT2269	0.60	-2.4
2,851,026	+		BT2269	0.60	-1.9
2,851,040	+		BT2269	0.61	-1.2
2,851,041	-		BT2269	0.61	-1.1
2,851,041	-		BT2269	0.61	-1.6
2,851,057	-		BT2269	0.63	-2.3