Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0263

Experiment: Post-colonization (Day 4) - Cage5;Mouse2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0262 and BT0263 are separated by 95 nucleotidesBT0263 and BT0264 are separated by 125 nucleotides BT0262: BT0262 - hypothetical protein (NCBI ptt file), at 292,568 to 293,203 BT0262 BT0263: BT0263 - hypothetical protein (NCBI ptt file), at 293,299 to 294,711 BT0263 BT0264: BT0264 - conserved hypothetical protein (NCBI ptt file), at 294,837 to 296,585 BT0264 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1at 292.343 kb on + strandat 292.520 kb on - strandat 292.520 kb on - strandat 292.687 kb on - strand, within BT0262at 292.687 kb on - strand, within BT0262at 292.691 kb on - strand, within BT0262at 292.760 kb on - strand, within BT0262at 292.915 kb on - strand, within BT0262at 292.955 kb on - strand, within BT0262at 292.955 kb on - strand, within BT0262at 292.957 kb on - strand, within BT0262at 292.957 kb on - strand, within BT0262at 292.960 kb on + strand, within BT0262at 293.006 kb on + strand, within BT0262at 293.008 kb on + strand, within BT0262at 293.053 kb on - strand, within BT0262at 293.053 kb on - strand, within BT0262at 293.062 kb on + strand, within BT0262at 293.103 kb on + strand, within BT0262at 293.126 kb on - strand, within BT0262at 293.126 kb on - strand, within BT0262at 293.128 kb on - strand, within BT0262at 293.151 kb on - strandat 293.217 kb on + strandat 293.245 kb on - strandat 293.250 kb on + strandat 293.256 kb on + strandat 293.339 kb on - strandat 293.419 kb on + strandat 293.484 kb on + strand, within BT0263at 293.484 kb on + strand, within BT0263at 293.508 kb on + strand, within BT0263at 293.509 kb on - strand, within BT0263at 293.552 kb on + strand, within BT0263at 293.586 kb on - strand, within BT0263at 293.589 kb on - strand, within BT0263at 293.634 kb on + strand, within BT0263at 293.722 kb on - strand, within BT0263at 293.769 kb on + strand, within BT0263at 293.885 kb on - strand, within BT0263at 293.904 kb on + strand, within BT0263at 293.904 kb on + strand, within BT0263at 293.969 kb on - strand, within BT0263at 293.978 kb on + strand, within BT0263at 293.978 kb on + strand, within BT0263at 293.979 kb on - strand, within BT0263at 294.008 kb on - strand, within BT0263at 294.032 kb on - strand, within BT0263at 294.036 kb on + strand, within BT0263at 294.046 kb on + strand, within BT0263at 294.047 kb on - strand, within BT0263at 294.064 kb on - strand, within BT0263at 294.102 kb on + strand, within BT0263at 294.102 kb on + strand, within BT0263at 294.105 kb on - strand, within BT0263at 294.258 kb on - strand, within BT0263at 294.392 kb on + strand, within BT0263at 294.468 kb on + strand, within BT0263at 294.600 kb on + strandat 294.600 kb on + strandat 294.601 kb on - strandat 294.692 kb on + strandat 294.706 kb on + strandat 294.707 kb on - strandat 294.710 kb on - strandat 294.728 kb on + strandat 294.733 kb on - strandat 294.794 kb on + strandat 294.941 kb on - strandat 294.946 kb on + strandat 294.976 kb on - strandat 294.997 kb on - strandat 295.053 kb on - strand, within BT0264at 295.134 kb on + strand, within BT0264at 295.145 kb on + strand, within BT0264at 295.148 kb on - strand, within BT0264at 295.190 kb on + strand, within BT0264at 295.197 kb on + strand, within BT0264at 295.203 kb on - strand, within BT0264at 295.276 kb on - strand, within BT0264at 295.307 kb on + strand, within BT0264at 295.308 kb on - strand, within BT0264at 295.311 kb on - strand, within BT0264at 295.311 kb on - strand, within BT0264at 295.342 kb on + strand, within BT0264at 295.450 kb on - strand, within BT0264at 295.508 kb on + strand, within BT0264at 295.526 kb on + strand, within BT0264at 295.526 kb on + strand, within BT0264at 295.616 kb on - strand, within BT0264at 295.680 kb on + strand, within BT0264

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Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage5;Mouse2
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292,343 + +0.8
292,520 - -0.7
292,520 - -0.2
292,687 - BT0262 0.19 -1.5
292,687 - BT0262 0.19 +0.7
292,691 - BT0262 0.19 +0.6
292,760 - BT0262 0.30 -0.4
292,915 - BT0262 0.55 -0.3
292,955 - BT0262 0.61 +0.1
292,955 - BT0262 0.61 +0.1
292,957 - BT0262 0.61 -0.9
292,957 - BT0262 0.61 +0.4
292,960 + BT0262 0.62 +1.6
293,006 + BT0262 0.69 +0.2
293,008 + BT0262 0.69 -0.6
293,053 - BT0262 0.76 -0.6
293,053 - BT0262 0.76 -1.4
293,062 + BT0262 0.78 +0.3
293,103 + BT0262 0.84 -1.1
293,126 - BT0262 0.88 +0.3
293,126 - BT0262 0.88 +1.0
293,128 - BT0262 0.88 -0.0
293,151 - -0.8
293,217 + +0.8
293,245 - -0.6
293,250 + +1.6
293,256 + +0.5
293,339 - -0.2
293,419 + -3.0
293,484 + BT0263 0.13 -1.1
293,484 + BT0263 0.13 -1.5
293,508 + BT0263 0.15 -1.8
293,509 - BT0263 0.15 +0.4
293,552 + BT0263 0.18 -0.4
293,586 - BT0263 0.20 -1.3
293,589 - BT0263 0.21 -1.3
293,634 + BT0263 0.24 +0.3
293,722 - BT0263 0.30 -0.8
293,769 + BT0263 0.33 -1.8
293,885 - BT0263 0.41 -0.6
293,904 + BT0263 0.43 -0.9
293,904 + BT0263 0.43 -0.6
293,969 - BT0263 0.47 -2.0
293,978 + BT0263 0.48 -1.0
293,978 + BT0263 0.48 -0.6
293,979 - BT0263 0.48 -2.0
294,008 - BT0263 0.50 -0.7
294,032 - BT0263 0.52 -1.3
294,036 + BT0263 0.52 -0.0
294,046 + BT0263 0.53 -0.6
294,047 - BT0263 0.53 -1.3
294,064 - BT0263 0.54 +0.2
294,102 + BT0263 0.57 -0.4
294,102 + BT0263 0.57 -1.2
294,105 - BT0263 0.57 -2.9
294,258 - BT0263 0.68 -1.5
294,392 + BT0263 0.77 +1.6
294,468 + BT0263 0.83 -0.6
294,600 + +1.0
294,600 + -1.3
294,601 - -0.4
294,692 + +1.4
294,706 + -1.8
294,707 - -2.2
294,710 - +0.1
294,728 + -1.5
294,733 - +0.6
294,794 + +0.5
294,941 - +0.7
294,946 + -1.0
294,976 - -0.2
294,997 - -0.1
295,053 - BT0264 0.12 +1.6
295,134 + BT0264 0.17 +0.5
295,145 + BT0264 0.18 -1.6
295,148 - BT0264 0.18 +0.7
295,190 + BT0264 0.20 -0.6
295,197 + BT0264 0.21 +0.3
295,203 - BT0264 0.21 -1.1
295,276 - BT0264 0.25 -0.0
295,307 + BT0264 0.27 -0.6
295,308 - BT0264 0.27 +1.0
295,311 - BT0264 0.27 -2.6
295,311 - BT0264 0.27 -2.6
295,342 + BT0264 0.29 +0.2
295,450 - BT0264 0.35 +0.1
295,508 + BT0264 0.38 +0.1
295,526 + BT0264 0.39 -1.5
295,526 + BT0264 0.39 -1.3
295,616 - BT0264 0.45 -1.0
295,680 + BT0264 0.48 -1.8

Or see this region's nucleotide sequence