Experiment: Post-colonization (Day 4) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0474 and BT0475 are separated by 13 nucleotides BT0475 and BT0476 are separated by 4 nucleotides BT0476 and BT0477 are separated by 15 nucleotides
BT0474: BT0474 - D-glycero-D-manno-heptose 1-phosphate kinase (NCBI ptt file), at 585,720 to 586,766
BT0474
BT0475: BT0475 - putative phosphoheptose isomerase (NCBI ptt file), at 586,780 to 587,373
BT0475
BT0476: BT0476 - D-mannose-1-phosphate guanyltransferase (NCBI ptt file), at 587,378 to 588,085
BT0476
BT0477: BT0477 - putative phosphatase (NCBI ptt file), at 588,101 to 588,571
BT0477
Position (kb) 586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 585.789 kb on - strand at 585.841 kb on - strand, within BT0474 at 585.841 kb on - strand, within BT0474 at 585.849 kb on - strand, within BT0474 at 586.027 kb on - strand, within BT0474 at 586.068 kb on - strand, within BT0474 at 586.121 kb on - strand, within BT0474 at 586.201 kb on - strand, within BT0474 at 586.228 kb on - strand, within BT0474 at 586.230 kb on - strand, within BT0474 at 586.356 kb on - strand, within BT0474 at 586.416 kb on - strand, within BT0474 at 586.650 kb on - strand, within BT0474 at 586.673 kb on - strand at 586.710 kb on - strand at 586.771 kb on - strand at 587.038 kb on - strand, within BT0475 at 587.038 kb on - strand, within BT0475 at 587.188 kb on - strand, within BT0475 at 587.323 kb on - strand at 587.439 kb on + strand at 587.488 kb on - strand, within BT0476 at 587.607 kb on - strand, within BT0476 at 587.893 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 588.148 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage4;Mouse1 remove 585,789 - +0.0 585,841 - BT0474 0.12 +0.7 585,841 - BT0474 0.12 -1.5 585,849 - BT0474 0.12 +1.0 586,027 - BT0474 0.29 +0.0 586,068 - BT0474 0.33 +1.0 586,121 - BT0474 0.38 +0.8 586,201 - BT0474 0.46 +2.0 586,228 - BT0474 0.49 +0.7 586,230 - BT0474 0.49 +0.9 586,356 - BT0474 0.61 +0.2 586,416 - BT0474 0.66 -0.2 586,650 - BT0474 0.89 +1.4 586,673 - +0.0 586,710 - -1.6 586,771 - -1.6 587,038 - BT0475 0.43 +0.7 587,038 - BT0475 0.43 +1.0 587,188 - BT0475 0.69 -0.3 587,323 - -2.6 587,439 + +1.8 587,488 - BT0476 0.16 -1.8 587,607 - BT0476 0.32 +0.4 587,893 - BT0476 0.73 +2.3 587,895 - BT0476 0.73 +1.8 587,895 - BT0476 0.73 -1.1 588,148 - BT0477 0.10 -0.3 588,337 - BT0477 0.50 -0.7 588,337 - BT0477 0.50 +0.6
Or see this region's nucleotide sequence