Experiment: Post-colonization (Day 4) - Cage1;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4034 and BT4035 are separated by 309 nucleotides BT4035 and BT4036 are separated by 17 nucleotides BT4036 and BT4037 are separated by 88 nucleotides
BT4034: BT4034 - hypothetical protein (NCBI ptt file), at 5,246,361 to 5,246,783
BT4034
BT4035: BT4035 - hypothetical protein (NCBI ptt file), at 5,247,093 to 5,247,413
BT4035
BT4036: BT4036 - hypothetical protein (NCBI ptt file), at 5,247,431 to 5,247,979
BT4036
BT4037: BT4037 - hypothetical protein (NCBI ptt file), at 5,248,068 to 5,248,325
BT4037
Position (kb) 5247
5248 Strain fitness (log2 ratio) -2
-1
0
1 at 5246.118 kb on + strand at 5246.180 kb on - strand at 5246.218 kb on + strand at 5246.409 kb on - strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.640 kb on + strand, within BT4034 at 5246.641 kb on - strand, within BT4034 at 5246.652 kb on - strand, within BT4034 at 5246.695 kb on - strand, within BT4034 at 5246.971 kb on - strand at 5247.022 kb on - strand at 5247.074 kb on - strand at 5247.074 kb on - strand at 5247.094 kb on + strand at 5247.429 kb on - strand at 5247.429 kb on - strand at 5247.446 kb on - strand at 5247.446 kb on - strand at 5247.533 kb on - strand, within BT4036 at 5247.611 kb on - strand, within BT4036 at 5247.743 kb on + strand, within BT4036 at 5248.008 kb on - strand at 5248.070 kb on - strand at 5248.093 kb on + strand at 5248.125 kb on - strand, within BT4037 at 5248.125 kb on - strand, within BT4037 at 5248.129 kb on - strand, within BT4037 at 5248.145 kb on + strand, within BT4037 at 5248.233 kb on + strand, within BT4037 at 5248.234 kb on - strand, within BT4037 at 5248.236 kb on - strand, within BT4037 at 5248.244 kb on + strand, within BT4037 at 5248.244 kb on + strand, within BT4037 at 5248.244 kb on + strand, within BT4037 at 5248.269 kb on + strand, within BT4037 at 5248.272 kb on - strand, within BT4037 at 5248.272 kb on - strand, within BT4037 at 5248.294 kb on + strand, within BT4037
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1;Mouse2 remove 5,246,118 + +0.3 5,246,180 - -1.6 5,246,218 + -0.7 5,246,409 - BT4034 0.11 -1.7 5,246,518 + BT4034 0.37 -1.6 5,246,518 + BT4034 0.37 -1.5 5,246,518 + BT4034 0.37 -1.9 5,246,640 + BT4034 0.66 -0.4 5,246,641 - BT4034 0.66 -2.1 5,246,652 - BT4034 0.69 -1.1 5,246,695 - BT4034 0.79 -1.4 5,246,971 - -1.7 5,247,022 - -0.5 5,247,074 - -0.7 5,247,074 - +1.4 5,247,094 + -0.7 5,247,429 - +0.2 5,247,429 - +0.2 5,247,446 - -1.1 5,247,446 - +1.1 5,247,533 - BT4036 0.19 +0.6 5,247,611 - BT4036 0.33 +0.5 5,247,743 + BT4036 0.57 -0.2 5,248,008 - +0.9 5,248,070 - -1.2 5,248,093 + -0.7 5,248,125 - BT4037 0.22 +0.3 5,248,125 - BT4037 0.22 -1.1 5,248,129 - BT4037 0.24 +0.1 5,248,145 + BT4037 0.30 +0.3 5,248,233 + BT4037 0.64 +0.0 5,248,234 - BT4037 0.64 -0.8 5,248,236 - BT4037 0.65 +1.3 5,248,244 + BT4037 0.68 -1.0 5,248,244 + BT4037 0.68 +1.3 5,248,244 + BT4037 0.68 -0.3 5,248,269 + BT4037 0.78 -0.6 5,248,272 - BT4037 0.79 -0.9 5,248,272 - BT4037 0.79 +1.1 5,248,294 + BT4037 0.88 +0.1
Or see this region's nucleotide sequence