Experiment: Post-colonization (Day 4) - Cage1;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0773 and BT0774 are separated by 51 nucleotides BT0774 and BT0775 are separated by 128 nucleotides
BT0773: BT0773 - alpha-amylase 3 (NCBI ptt file), at 963,212 to 964,909
BT0773
BT0774: BT0774 - conserved protein with a conserved patatin-like phospholipase domain (NCBI ptt file), at 964,961 to 965,767
BT0774
BT0775: BT0775 - ferredoxin-type protein (NCBI ptt file), at 965,896 to 967,461
BT0775
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 963.974 kb on - strand, within BT0773 at 963.978 kb on + strand, within BT0773 at 964.008 kb on + strand, within BT0773 at 964.391 kb on + strand, within BT0773 at 964.393 kb on + strand, within BT0773 at 964.406 kb on - strand, within BT0773 at 964.406 kb on - strand, within BT0773 at 964.410 kb on + strand, within BT0773 at 964.425 kb on + strand, within BT0773 at 964.426 kb on - strand, within BT0773 at 964.496 kb on + strand, within BT0773 at 964.497 kb on - strand, within BT0773 at 964.611 kb on - strand, within BT0773 at 964.620 kb on + strand, within BT0773 at 964.732 kb on + strand, within BT0773 at 964.732 kb on + strand, within BT0773 at 964.742 kb on - strand at 964.802 kb on - strand at 964.833 kb on + strand at 964.833 kb on + strand at 964.882 kb on - strand at 964.882 kb on - strand at 964.917 kb on - strand at 965.020 kb on + strand at 965.022 kb on + strand at 965.077 kb on - strand, within BT0774 at 965.210 kb on + strand, within BT0774 at 965.387 kb on - strand, within BT0774 at 965.557 kb on - strand, within BT0774 at 965.632 kb on + strand, within BT0774 at 965.648 kb on - strand, within BT0774 at 965.699 kb on - strand at 965.719 kb on - strand at 965.724 kb on - strand at 965.735 kb on - strand at 965.801 kb on + strand at 965.985 kb on - strand at 965.986 kb on + strand at 965.987 kb on - strand at 965.987 kb on - strand at 966.083 kb on + strand, within BT0775 at 966.093 kb on + strand, within BT0775 at 966.172 kb on + strand, within BT0775 at 966.175 kb on - strand, within BT0775 at 966.504 kb on + strand at 966.504 kb on + strand, within BT0775 at 966.712 kb on - strand, within BT0775 at 966.712 kb on - strand, within BT0775 at 966.712 kb on - strand, within BT0775
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1;Mouse2 remove 963,974 - BT0773 0.45 -0.2 963,978 + BT0773 0.45 +0.4 964,008 + BT0773 0.47 -0.4 964,391 + BT0773 0.69 +0.4 964,393 + BT0773 0.70 -1.7 964,406 - BT0773 0.70 -1.3 964,406 - BT0773 0.70 +0.3 964,410 + BT0773 0.71 +0.8 964,425 + BT0773 0.71 -0.2 964,426 - BT0773 0.71 -0.3 964,496 + BT0773 0.76 +1.2 964,497 - BT0773 0.76 -0.1 964,611 - BT0773 0.82 -1.7 964,620 + BT0773 0.83 -0.6 964,732 + BT0773 0.90 -0.0 964,732 + BT0773 0.90 +0.8 964,742 - +0.8 964,802 - +0.4 964,833 + -0.3 964,833 + +0.1 964,882 - -0.5 964,882 - -0.4 964,917 - +1.1 965,020 + +1.1 965,022 + +0.5 965,077 - BT0774 0.14 -0.3 965,210 + BT0774 0.31 +1.8 965,387 - BT0774 0.53 +0.5 965,557 - BT0774 0.74 -0.4 965,632 + BT0774 0.83 +0.2 965,648 - BT0774 0.85 -1.0 965,699 - +0.8 965,719 - -0.0 965,724 - +0.1 965,735 - -0.4 965,801 + +1.4 965,985 - -0.5 965,986 + -0.2 965,987 - -0.0 965,987 - +0.1 966,083 + BT0775 0.12 -1.7 966,093 + BT0775 0.13 -0.9 966,172 + BT0775 0.18 +0.8 966,175 - BT0775 0.18 -1.9 966,504 + +0.8 966,504 + BT0775 0.39 -2.2 966,712 - BT0775 0.52 -0.4 966,712 - BT0775 0.52 -1.4 966,712 - BT0775 0.52 -1.3
Or see this region's nucleotide sequence