Experiment: Post-colonization (Day 4) - Cage1;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0461 and BT0462 are separated by 333 nucleotides BT0462 and BT0463 are separated by 174 nucleotides
BT0461: BT0461 - beta-galactosidase (NCBI ptt file), at 570,314 to 572,833
BT0461
BT0462: BT0462 - putative transcriptional regulator (NCBI ptt file), at 573,167 to 573,721
BT0462
BT0463: BT0463 - glucose-1-phosphate thymidylyltransferase (NCBI ptt file), at 573,896 to 574,783
BT0463
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 572.226 kb on + strand, within BT0461 at 572.227 kb on - strand, within BT0461 at 572.242 kb on - strand, within BT0461 at 572.245 kb on + strand, within BT0461 at 572.246 kb on - strand, within BT0461 at 572.253 kb on - strand, within BT0461 at 572.327 kb on - strand, within BT0461 at 572.402 kb on + strand, within BT0461 at 572.433 kb on - strand, within BT0461 at 572.494 kb on + strand, within BT0461 at 572.572 kb on + strand, within BT0461 at 572.572 kb on + strand, within BT0461 at 572.660 kb on - strand at 572.855 kb on + strand at 572.882 kb on - strand at 572.888 kb on - strand at 572.948 kb on + strand at 572.978 kb on - strand at 573.039 kb on + strand at 573.039 kb on + strand at 573.125 kb on + strand at 573.216 kb on - strand at 573.239 kb on - strand, within BT0462 at 573.239 kb on - strand, within BT0462 at 573.285 kb on - strand, within BT0462 at 573.405 kb on + strand, within BT0462 at 573.424 kb on + strand, within BT0462 at 573.430 kb on - strand, within BT0462 at 573.633 kb on - strand at 573.645 kb on - strand, within BT0462 at 573.658 kb on + strand, within BT0462 at 573.659 kb on - strand, within BT0462 at 573.670 kb on + strand at 573.880 kb on + strand at 573.977 kb on - strand at 573.999 kb on - strand, within BT0463 at 574.031 kb on - strand, within BT0463 at 574.062 kb on - strand, within BT0463 at 574.288 kb on + strand, within BT0463 at 574.352 kb on - strand, within BT0463 at 574.430 kb on + strand, within BT0463 at 574.435 kb on + strand, within BT0463 at 574.462 kb on + strand, within BT0463 at 574.549 kb on - strand, within BT0463 at 574.549 kb on - strand, within BT0463 at 574.664 kb on - strand, within BT0463 at 574.691 kb on - strand, within BT0463 at 574.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1;Mouse2 remove 572,226 + BT0461 0.76 -1.5 572,227 - BT0461 0.76 +0.6 572,242 - BT0461 0.77 +0.6 572,245 + BT0461 0.77 -0.9 572,246 - BT0461 0.77 -1.7 572,253 - BT0461 0.77 +0.4 572,327 - BT0461 0.80 -1.2 572,402 + BT0461 0.83 -1.6 572,433 - BT0461 0.84 -0.3 572,494 + BT0461 0.87 -0.0 572,572 + BT0461 0.90 -1.4 572,572 + BT0461 0.90 +0.9 572,660 - +0.9 572,855 + +0.2 572,882 - +0.0 572,888 - -0.2 572,948 + -0.8 572,978 - +0.5 573,039 + -1.4 573,039 + -0.0 573,125 + -0.1 573,216 - +0.5 573,239 - BT0462 0.13 +0.5 573,239 - BT0462 0.13 -0.5 573,285 - BT0462 0.21 +1.2 573,405 + BT0462 0.43 -2.0 573,424 + BT0462 0.46 -0.0 573,430 - BT0462 0.47 -2.0 573,633 - -1.5 573,645 - BT0462 0.86 -1.5 573,658 + BT0462 0.88 +0.8 573,659 - BT0462 0.89 +0.9 573,670 + +0.4 573,880 + -0.7 573,977 - +0.8 573,999 - BT0463 0.12 +0.8 574,031 - BT0463 0.15 +0.4 574,062 - BT0463 0.19 -1.2 574,288 + BT0463 0.44 -0.4 574,352 - BT0463 0.51 +1.4 574,430 + BT0463 0.60 -1.8 574,435 + BT0463 0.61 -1.0 574,462 + BT0463 0.64 +0.8 574,549 - BT0463 0.74 -0.1 574,549 - BT0463 0.74 -1.5 574,664 - BT0463 0.86 -0.6 574,691 - BT0463 0.90 +0.6 574,720 + -0.2
Or see this region's nucleotide sequence