Experiment: Post-colonization (Day 4) - Cage1;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0391 and BT0392 are separated by 16 nucleotides BT0392 and BT0393 are separated by 1 nucleotides BT0393 and BT0394 are separated by 17 nucleotides
BT0391: BT0391 - putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file), at 480,554 to 481,705
BT0391
BT0392: BT0392 - lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file), at 481,722 to 482,828
BT0392
BT0393: BT0393 - serine acetyltransferase (NCBI ptt file), at 482,830 to 483,435
BT0393
BT0394: BT0394 - capsular polysaccharide biosynthesis glycosyltransferase (NCBI ptt file), at 483,453 to 484,547
BT0394
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.759 kb on + strand, within BT0391 at 480.761 kb on + strand, within BT0391 at 480.881 kb on + strand, within BT0391 at 480.917 kb on - strand, within BT0391 at 481.013 kb on - strand, within BT0391 at 481.028 kb on - strand, within BT0391 at 481.114 kb on + strand, within BT0391 at 481.132 kb on + strand, within BT0391 at 481.184 kb on - strand, within BT0391 at 481.194 kb on + strand, within BT0391 at 481.261 kb on - strand, within BT0391 at 481.312 kb on + strand, within BT0391 at 481.352 kb on + strand, within BT0391 at 481.406 kb on + strand, within BT0391 at 481.410 kb on + strand, within BT0391 at 481.457 kb on - strand, within BT0391 at 481.486 kb on - strand, within BT0391 at 481.558 kb on - strand, within BT0391 at 481.566 kb on + strand, within BT0391 at 481.567 kb on - strand, within BT0391 at 481.612 kb on + strand at 481.658 kb on - strand at 481.663 kb on + strand at 481.664 kb on - strand at 481.697 kb on - strand at 481.704 kb on - strand at 481.736 kb on - strand at 481.913 kb on - strand, within BT0392 at 481.919 kb on - strand, within BT0392 at 481.955 kb on + strand, within BT0392 at 481.991 kb on - strand, within BT0392 at 482.197 kb on + strand, within BT0392 at 482.198 kb on - strand, within BT0392 at 482.199 kb on + strand, within BT0392 at 482.205 kb on + strand, within BT0392 at 482.218 kb on - strand, within BT0392 at 482.219 kb on + strand, within BT0392 at 482.317 kb on - strand, within BT0392 at 482.353 kb on + strand, within BT0392 at 482.622 kb on - strand, within BT0392 at 483.014 kb on - strand, within BT0393 at 483.058 kb on - strand, within BT0393 at 483.109 kb on - strand, within BT0393 at 483.283 kb on - strand, within BT0393 at 483.289 kb on - strand, within BT0393 at 483.314 kb on + strand, within BT0393 at 483.556 kb on - strand at 483.668 kb on + strand, within BT0394 at 483.714 kb on - strand, within BT0394 at 483.728 kb on + strand, within BT0394 at 483.729 kb on - strand, within BT0394 at 483.740 kb on + strand, within BT0394 at 483.750 kb on - strand, within BT0394 at 483.754 kb on + strand, within BT0394 at 483.754 kb on + strand, within BT0394
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1;Mouse2 remove 480,759 + BT0391 0.18 -0.2 480,761 + BT0391 0.18 +2.1 480,881 + BT0391 0.28 -1.6 480,917 - BT0391 0.32 +0.8 481,013 - BT0391 0.40 -2.3 481,028 - BT0391 0.41 -1.8 481,114 + BT0391 0.49 +1.6 481,132 + BT0391 0.50 -1.0 481,184 - BT0391 0.55 -0.2 481,194 + BT0391 0.56 -0.2 481,261 - BT0391 0.61 -1.0 481,312 + BT0391 0.66 +2.5 481,352 + BT0391 0.69 +1.4 481,406 + BT0391 0.74 -0.8 481,410 + BT0391 0.74 -0.2 481,457 - BT0391 0.78 +0.4 481,486 - BT0391 0.81 +1.4 481,558 - BT0391 0.87 +1.8 481,566 + BT0391 0.88 +1.8 481,567 - BT0391 0.88 +0.4 481,612 + +0.5 481,658 - +0.8 481,663 + -2.2 481,664 - -0.8 481,697 - +2.1 481,704 - +0.8 481,736 - +0.2 481,913 - BT0392 0.17 +1.6 481,919 - BT0392 0.18 -0.6 481,955 + BT0392 0.21 +0.2 481,991 - BT0392 0.24 -0.2 482,197 + BT0392 0.43 -1.7 482,198 - BT0392 0.43 -0.6 482,199 + BT0392 0.43 +1.6 482,205 + BT0392 0.44 +0.1 482,218 - BT0392 0.45 +0.8 482,219 + BT0392 0.45 -1.2 482,317 - BT0392 0.54 +0.9 482,353 + BT0392 0.57 -0.6 482,622 - BT0392 0.81 +2.4 483,014 - BT0393 0.30 -1.6 483,058 - BT0393 0.38 -0.9 483,109 - BT0393 0.46 -0.4 483,283 - BT0393 0.75 -0.4 483,289 - BT0393 0.76 -0.1 483,314 + BT0393 0.80 +0.4 483,556 - -1.8 483,668 + BT0394 0.20 -1.6 483,714 - BT0394 0.24 +0.5 483,728 + BT0394 0.25 -1.6 483,729 - BT0394 0.25 +0.8 483,740 + BT0394 0.26 -0.8 483,750 - BT0394 0.27 -0.1 483,754 + BT0394 0.27 +0.8 483,754 + BT0394 0.27 -0.6
Or see this region's nucleotide sequence