Experiment: MoYLS4 media with ammonia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0192 and DVU0193 overlap by 8 nucleotides DVU0193 and DVU0194 are separated by 16 nucleotides DVU0194 and DVU0195 overlap by 4 nucleotides DVU0195 and DORF26313 overlap by 8 nucleotides DORF26313 and DVU0196 are separated by 362 nucleotides
DVU0192: DVU0192 - adenine specific DNA methyltransferase, putative (TIGR), at 237,390 to 238,748
DVU0192
DVU0193: DVU0193 - hypothetical protein (TIGR), at 238,741 to 239,472
DVU0193
DVU0194: DVU0194 - terminase, large subunit, putative (TIGR), at 239,489 to 241,447
DVU0194
DVU0195: DVU0195 - hypothetical protein (TIGR), at 241,444 to 241,662
DVU0195
DORF26313: DORF26313 - no description, at 241,655 to 242,083
DORF26313
DVU0196: DVU0196 - hypothetical protein (TIGR), at 242,446 to 242,586
DVU0196
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -1
0
1 at 239.001 kb on + strand, within DVU0193 at 239.009 kb on - strand, within DVU0193 at 239.050 kb on + strand, within DVU0193 at 239.053 kb on - strand, within DVU0193 at 239.054 kb on - strand, within DVU0193 at 239.060 kb on + strand, within DVU0193 at 239.081 kb on + strand, within DVU0193 at 239.089 kb on - strand, within DVU0193 at 239.089 kb on - strand, within DVU0193 at 239.300 kb on + strand, within DVU0193 at 239.310 kb on + strand, within DVU0193 at 239.404 kb on + strand at 239.467 kb on + strand at 239.511 kb on + strand at 239.519 kb on - strand at 239.519 kb on - strand at 239.644 kb on + strand at 239.647 kb on - strand at 239.699 kb on - strand, within DVU0194 at 239.764 kb on - strand, within DVU0194 at 239.896 kb on + strand, within DVU0194 at 239.933 kb on - strand, within DVU0194 at 239.939 kb on - strand, within DVU0194 at 239.965 kb on + strand, within DVU0194 at 240.053 kb on - strand, within DVU0194 at 240.273 kb on - strand, within DVU0194 at 240.528 kb on - strand, within DVU0194 at 240.567 kb on + strand, within DVU0194 at 240.629 kb on + strand, within DVU0194 at 240.648 kb on + strand, within DVU0194 at 240.648 kb on + strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.678 kb on + strand, within DVU0194 at 240.684 kb on + strand, within DVU0194 at 240.686 kb on - strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.759 kb on - strand, within DVU0194 at 240.814 kb on - strand, within DVU0194 at 240.940 kb on - strand, within DVU0194 at 241.258 kb on + strand at 241.291 kb on + strand at 241.309 kb on - strand at 241.326 kb on + strand at 241.373 kb on - strand at 241.383 kb on - strand at 241.426 kb on - strand at 241.428 kb on + strand at 241.428 kb on + strand at 241.437 kb on - strand at 241.449 kb on - strand at 241.449 kb on - strand at 241.580 kb on + strand, within DVU0195 at 241.588 kb on - strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.612 kb on - strand, within DVU0195 at 241.726 kb on + strand, within DORF26313 at 241.726 kb on - strand, within DORF26313 at 241.783 kb on + strand, within DORF26313 at 241.976 kb on - strand, within DORF26313 at 242.031 kb on + strand, within DORF26313 at 242.034 kb on - strand, within DORF26313 at 242.050 kb on - strand at 242.075 kb on + strand at 242.077 kb on + strand at 242.077 kb on + strand at 242.140 kb on - strand at 242.162 kb on - strand at 242.181 kb on - strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.330 kb on - strand at 242.347 kb on + strand at 242.347 kb on + strand at 242.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with ammonia remove 239,001 + DVU0193 0.36 -1.0 239,009 - DVU0193 0.37 +0.5 239,050 + DVU0193 0.42 -0.2 239,053 - DVU0193 0.43 -1.3 239,054 - DVU0193 0.43 -0.9 239,060 + DVU0193 0.44 -0.0 239,081 + DVU0193 0.46 -1.3 239,089 - DVU0193 0.48 +1.2 239,089 - DVU0193 0.48 -0.4 239,300 + DVU0193 0.76 +0.2 239,310 + DVU0193 0.78 +1.2 239,404 + -1.6 239,467 + -0.4 239,511 + -0.8 239,519 - -0.4 239,519 - -0.4 239,644 + -0.4 239,647 - -1.2 239,699 - DVU0194 0.11 -1.4 239,764 - DVU0194 0.14 -0.1 239,896 + DVU0194 0.21 +0.4 239,933 - DVU0194 0.23 -0.5 239,939 - DVU0194 0.23 -0.3 239,965 + DVU0194 0.24 -0.6 240,053 - DVU0194 0.29 +0.3 240,273 - DVU0194 0.40 -0.8 240,528 - DVU0194 0.53 -0.3 240,567 + DVU0194 0.55 -1.3 240,629 + DVU0194 0.58 -0.5 240,648 + DVU0194 0.59 +0.2 240,648 + DVU0194 0.59 -0.3 240,656 - DVU0194 0.60 -0.1 240,656 - DVU0194 0.60 -0.5 240,656 - DVU0194 0.60 +0.2 240,678 + DVU0194 0.61 +1.1 240,684 + DVU0194 0.61 -0.3 240,686 - DVU0194 0.61 -1.1 240,751 + DVU0194 0.64 -0.2 240,751 + DVU0194 0.64 -0.4 240,759 - DVU0194 0.65 -0.1 240,814 - DVU0194 0.68 -1.0 240,940 - DVU0194 0.74 +1.2 241,258 + -1.4 241,291 + +0.3 241,309 - -0.1 241,326 + -0.4 241,373 - -0.8 241,383 - -0.6 241,426 - -0.6 241,428 + -0.5 241,428 + -0.5 241,437 - -0.4 241,449 - +0.2 241,449 - +1.2 241,580 + DVU0195 0.62 -0.4 241,588 - DVU0195 0.66 -0.4 241,604 + DVU0195 0.73 -0.3 241,604 + DVU0195 0.73 -0.4 241,604 + DVU0195 0.73 -0.6 241,604 + DVU0195 0.73 -1.0 241,612 - DVU0195 0.77 +0.2 241,726 + DORF26313 0.17 +0.2 241,726 - DORF26313 0.17 -0.3 241,783 + DORF26313 0.30 +0.2 241,976 - DORF26313 0.75 -1.4 242,031 + DORF26313 0.88 -0.7 242,034 - DORF26313 0.88 -0.1 242,050 - -0.9 242,075 + -1.2 242,077 + -0.5 242,077 + +1.2 242,140 - -0.2 242,162 - -0.8 242,181 - -0.5 242,206 - -0.0 242,206 - -0.5 242,330 - -0.5 242,347 + -0.1 242,347 + -0.2 242,442 + +0.4
Or see this region's nucleotide sequence