Experiment: LB outgrowth control more dilute start
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25910 and PFLU_RS25915 are separated by 97 nucleotides PFLU_RS25915 and PFLU_RS25920 are separated by 98 nucleotides PFLU_RS25920 and PFLU_RS25925 are separated by 63 nucleotides PFLU_RS25925 and PFLU_RS25930 overlap by 8 nucleotides
PFLU_RS25910: PFLU_RS25910 - DNA repair protein RecN, at 5,787,900 to 5,789,573
_RS25910
PFLU_RS25915: PFLU_RS25915 - ferric iron uptake transcriptional regulator, at 5,789,671 to 5,790,075
_RS25915
PFLU_RS25920: PFLU_RS25920 - outer membrane protein assembly factor BamE, at 5,790,174 to 5,790,701
_RS25920
PFLU_RS25925: PFLU_RS25925 - RnfH family protein, at 5,790,765 to 5,791,067
_RS25925
PFLU_RS25930: PFLU_RS25930 - type II toxin-antitoxin system RatA family toxin, at 5,791,060 to 5,791,494
_RS25930
Position (kb) 5789
5790
5791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5788.705 kb on + strand, within PFLU_RS25910 at 5788.705 kb on + strand, within PFLU_RS25910 at 5788.705 kb on + strand, within PFLU_RS25910 at 5788.705 kb on + strand, within PFLU_RS25910 at 5788.706 kb on - strand, within PFLU_RS25910 at 5788.706 kb on - strand, within PFLU_RS25910 at 5788.706 kb on - strand, within PFLU_RS25910 at 5788.729 kb on + strand, within PFLU_RS25910 at 5788.729 kb on + strand, within PFLU_RS25910 at 5788.729 kb on + strand, within PFLU_RS25910 at 5788.730 kb on - strand, within PFLU_RS25910 at 5788.730 kb on - strand, within PFLU_RS25910 at 5788.730 kb on - strand, within PFLU_RS25910 at 5788.730 kb on - strand, within PFLU_RS25910 at 5788.801 kb on + strand, within PFLU_RS25910 at 5788.802 kb on - strand, within PFLU_RS25910 at 5788.802 kb on - strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.824 kb on + strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.825 kb on - strand, within PFLU_RS25910 at 5788.826 kb on + strand, within PFLU_RS25910 at 5788.826 kb on + strand, within PFLU_RS25910 at 5788.827 kb on - strand, within PFLU_RS25910 at 5788.827 kb on - strand, within PFLU_RS25910 at 5788.827 kb on - strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.936 kb on + strand, within PFLU_RS25910 at 5788.937 kb on - strand, within PFLU_RS25910 at 5788.937 kb on - strand, within PFLU_RS25910 at 5788.937 kb on - strand, within PFLU_RS25910 at 5788.937 kb on - strand, within PFLU_RS25910 at 5788.937 kb on - strand, within PFLU_RS25910 at 5789.121 kb on + strand, within PFLU_RS25910 at 5789.122 kb on - strand, within PFLU_RS25910 at 5789.122 kb on - strand, within PFLU_RS25910 at 5789.329 kb on + strand, within PFLU_RS25910 at 5789.329 kb on + strand, within PFLU_RS25910 at 5789.330 kb on - strand, within PFLU_RS25910 at 5789.330 kb on - strand, within PFLU_RS25910 at 5789.330 kb on - strand, within PFLU_RS25910 at 5789.330 kb on - strand, within PFLU_RS25910 at 5789.332 kb on + strand, within PFLU_RS25910 at 5789.332 kb on + strand, within PFLU_RS25910 at 5789.333 kb on - strand, within PFLU_RS25910 at 5789.333 kb on - strand, within PFLU_RS25910 at 5789.359 kb on + strand, within PFLU_RS25910 at 5789.360 kb on - strand, within PFLU_RS25910 at 5789.425 kb on + strand at 5789.425 kb on + strand at 5789.426 kb on - strand at 5789.426 kb on - strand at 5789.426 kb on - strand at 5789.603 kb on + strand at 5789.603 kb on + strand at 5789.604 kb on - strand at 5789.604 kb on - strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.605 kb on + strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.606 kb on - strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.626 kb on + strand at 5789.627 kb on - strand at 5789.627 kb on - strand at 5789.627 kb on - strand at 5789.627 kb on - strand at 5789.627 kb on - strand at 5789.683 kb on - strand at 5790.115 kb on - strand at 5790.124 kb on - strand at 5790.124 kb on - strand at 5790.124 kb on - strand at 5790.155 kb on + strand at 5790.155 kb on + strand at 5790.548 kb on + strand, within PFLU_RS25920 at 5790.548 kb on + strand, within PFLU_RS25920 at 5790.595 kb on + strand, within PFLU_RS25920 at 5790.595 kb on + strand, within PFLU_RS25920 at 5790.596 kb on - strand, within PFLU_RS25920 at 5790.596 kb on - strand, within PFLU_RS25920 at 5790.700 kb on - strand at 5790.700 kb on - strand at 5790.766 kb on + strand at 5790.767 kb on - strand at 5790.767 kb on - strand at 5790.767 kb on - strand at 5790.767 kb on - strand at 5790.857 kb on + strand, within PFLU_RS25925 at 5790.857 kb on + strand, within PFLU_RS25925 at 5790.858 kb on - strand, within PFLU_RS25925 at 5790.858 kb on - strand, within PFLU_RS25925 at 5790.963 kb on - strand, within PFLU_RS25925 at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.045 kb on + strand at 5791.046 kb on - strand at 5791.046 kb on - strand at 5791.046 kb on - strand at 5791.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB outgrowth control more dilute start remove 5,788,705 + PFLU_RS25910 0.48 -1.6 5,788,705 + PFLU_RS25910 0.48 +1.2 5,788,705 + PFLU_RS25910 0.48 +0.8 5,788,705 + PFLU_RS25910 0.48 +0.6 5,788,706 - PFLU_RS25910 0.48 +0.1 5,788,706 - PFLU_RS25910 0.48 -0.3 5,788,706 - PFLU_RS25910 0.48 +0.5 5,788,729 + PFLU_RS25910 0.50 -2.6 5,788,729 + PFLU_RS25910 0.50 -1.1 5,788,729 + PFLU_RS25910 0.50 -0.4 5,788,730 - PFLU_RS25910 0.50 +0.6 5,788,730 - PFLU_RS25910 0.50 -1.5 5,788,730 - PFLU_RS25910 0.50 -1.3 5,788,730 - PFLU_RS25910 0.50 -1.1 5,788,801 + PFLU_RS25910 0.54 +0.4 5,788,802 - PFLU_RS25910 0.54 +1.3 5,788,802 - PFLU_RS25910 0.54 -0.6 5,788,824 + PFLU_RS25910 0.55 +0.2 5,788,824 + PFLU_RS25910 0.55 -1.4 5,788,824 + PFLU_RS25910 0.55 +0.8 5,788,824 + PFLU_RS25910 0.55 -1.1 5,788,824 + PFLU_RS25910 0.55 -0.4 5,788,824 + PFLU_RS25910 0.55 +0.7 5,788,824 + PFLU_RS25910 0.55 -0.5 5,788,824 + PFLU_RS25910 0.55 -3.0 5,788,824 + PFLU_RS25910 0.55 -0.4 5,788,824 + PFLU_RS25910 0.55 +0.9 5,788,824 + PFLU_RS25910 0.55 -1.2 5,788,824 + PFLU_RS25910 0.55 -0.1 5,788,824 + PFLU_RS25910 0.55 -0.2 5,788,824 + PFLU_RS25910 0.55 -0.1 5,788,824 + PFLU_RS25910 0.55 +0.7 5,788,824 + PFLU_RS25910 0.55 +0.3 5,788,824 + PFLU_RS25910 0.55 -0.9 5,788,824 + PFLU_RS25910 0.55 -0.4 5,788,824 + PFLU_RS25910 0.55 -1.7 5,788,824 + PFLU_RS25910 0.55 -0.1 5,788,824 + PFLU_RS25910 0.55 -1.2 5,788,824 + PFLU_RS25910 0.55 +0.4 5,788,824 + PFLU_RS25910 0.55 +0.1 5,788,824 + PFLU_RS25910 0.55 +0.1 5,788,824 + PFLU_RS25910 0.55 -0.2 5,788,824 + PFLU_RS25910 0.55 -1.9 5,788,824 + PFLU_RS25910 0.55 -0.8 5,788,824 + PFLU_RS25910 0.55 +0.4 5,788,824 + PFLU_RS25910 0.55 +0.9 5,788,824 + PFLU_RS25910 0.55 +0.6 5,788,824 + PFLU_RS25910 0.55 -1.6 5,788,824 + PFLU_RS25910 0.55 -0.8 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 -1.1 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 +1.1 5,788,825 - PFLU_RS25910 0.55 +0.6 5,788,825 - PFLU_RS25910 0.55 +0.9 5,788,825 - PFLU_RS25910 0.55 -1.1 5,788,825 - PFLU_RS25910 0.55 -0.8 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 -1.1 5,788,825 - PFLU_RS25910 0.55 +0.4 5,788,825 - PFLU_RS25910 0.55 +0.7 5,788,825 - PFLU_RS25910 0.55 +0.1 5,788,825 - PFLU_RS25910 0.55 +0.4 5,788,825 - PFLU_RS25910 0.55 +0.9 5,788,825 - PFLU_RS25910 0.55 +1.6 5,788,825 - PFLU_RS25910 0.55 -0.7 5,788,825 - PFLU_RS25910 0.55 -2.2 5,788,825 - PFLU_RS25910 0.55 +0.1 5,788,825 - PFLU_RS25910 0.55 -1.5 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 +1.2 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 -0.1 5,788,825 - PFLU_RS25910 0.55 -0.1 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 -0.7 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 -1.2 5,788,825 - PFLU_RS25910 0.55 +0.6 5,788,825 - PFLU_RS25910 0.55 -1.1 5,788,825 - PFLU_RS25910 0.55 -0.4 5,788,825 - PFLU_RS25910 0.55 -2.0 5,788,825 - PFLU_RS25910 0.55 -0.5 5,788,825 - PFLU_RS25910 0.55 -1.3 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 -1.5 5,788,825 - PFLU_RS25910 0.55 -0.3 5,788,825 - PFLU_RS25910 0.55 +1.0 5,788,825 - PFLU_RS25910 0.55 -0.6 5,788,825 - PFLU_RS25910 0.55 +0.0 5,788,825 - PFLU_RS25910 0.55 -0.6 5,788,825 - PFLU_RS25910 0.55 -0.5 5,788,825 - PFLU_RS25910 0.55 +0.2 5,788,825 - PFLU_RS25910 0.55 +0.5 5,788,825 - PFLU_RS25910 0.55 +0.8 5,788,826 + PFLU_RS25910 0.55 -0.6 5,788,826 + PFLU_RS25910 0.55 -0.8 5,788,827 - PFLU_RS25910 0.55 -1.7 5,788,827 - PFLU_RS25910 0.55 -0.3 5,788,827 - PFLU_RS25910 0.55 -0.9 5,788,936 + PFLU_RS25910 0.62 -0.1 5,788,936 + PFLU_RS25910 0.62 -0.8 5,788,936 + PFLU_RS25910 0.62 -0.4 5,788,936 + PFLU_RS25910 0.62 -0.8 5,788,936 + PFLU_RS25910 0.62 -1.0 5,788,936 + PFLU_RS25910 0.62 +0.2 5,788,936 + PFLU_RS25910 0.62 +1.0 5,788,937 - PFLU_RS25910 0.62 +0.4 5,788,937 - PFLU_RS25910 0.62 +0.5 5,788,937 - PFLU_RS25910 0.62 +0.2 5,788,937 - PFLU_RS25910 0.62 -0.1 5,788,937 - PFLU_RS25910 0.62 -1.5 5,789,121 + PFLU_RS25910 0.73 -1.4 5,789,122 - PFLU_RS25910 0.73 -0.1 5,789,122 - PFLU_RS25910 0.73 -1.4 5,789,329 + PFLU_RS25910 0.85 -1.0 5,789,329 + PFLU_RS25910 0.85 +0.0 5,789,330 - PFLU_RS25910 0.85 +2.0 5,789,330 - PFLU_RS25910 0.85 -1.1 5,789,330 - PFLU_RS25910 0.85 -1.1 5,789,330 - PFLU_RS25910 0.85 -0.3 5,789,332 + PFLU_RS25910 0.86 -0.0 5,789,332 + PFLU_RS25910 0.86 -1.0 5,789,333 - PFLU_RS25910 0.86 +0.2 5,789,333 - PFLU_RS25910 0.86 -0.7 5,789,359 + PFLU_RS25910 0.87 -1.9 5,789,360 - PFLU_RS25910 0.87 +0.6 5,789,425 + +0.7 5,789,425 + -0.2 5,789,426 - +0.3 5,789,426 - +0.1 5,789,426 - -1.6 5,789,603 + +0.7 5,789,603 + -0.1 5,789,604 - +0.3 5,789,604 - -0.1 5,789,605 + -0.2 5,789,605 + -1.5 5,789,605 + -0.9 5,789,605 + +1.4 5,789,605 + -0.4 5,789,605 + +1.2 5,789,605 + -0.2 5,789,605 + +0.1 5,789,605 + +0.3 5,789,605 + +0.9 5,789,605 + +0.0 5,789,605 + +0.9 5,789,605 + +0.6 5,789,606 - +0.5 5,789,606 - -1.1 5,789,606 - -1.0 5,789,606 - +0.4 5,789,606 - +0.3 5,789,606 - +0.6 5,789,606 - -0.7 5,789,606 - -0.5 5,789,606 - +1.0 5,789,606 - -0.8 5,789,606 - -0.2 5,789,606 - +0.2 5,789,626 + +0.8 5,789,626 + -0.5 5,789,626 + -0.3 5,789,626 + +0.2 5,789,626 + -0.4 5,789,626 + -0.4 5,789,626 + -0.3 5,789,626 + +0.6 5,789,627 - +0.4 5,789,627 - +1.2 5,789,627 - +2.2 5,789,627 - +0.0 5,789,627 - -0.0 5,789,683 - -2.1 5,790,115 - -0.6 5,790,124 - +2.2 5,790,124 - +1.2 5,790,124 - +0.6 5,790,155 + +2.2 5,790,155 + +1.2 5,790,548 + PFLU_RS25920 0.71 -1.1 5,790,548 + PFLU_RS25920 0.71 +0.2 5,790,595 + PFLU_RS25920 0.80 -0.4 5,790,595 + PFLU_RS25920 0.80 +0.2 5,790,596 - PFLU_RS25920 0.80 -0.1 5,790,596 - PFLU_RS25920 0.80 -1.6 5,790,700 - +0.6 5,790,700 - +1.9 5,790,766 + +0.3 5,790,767 - +0.6 5,790,767 - +1.2 5,790,767 - -1.2 5,790,767 - +0.0 5,790,857 + PFLU_RS25925 0.30 -0.4 5,790,857 + PFLU_RS25925 0.30 +0.8 5,790,858 - PFLU_RS25925 0.31 +0.8 5,790,858 - PFLU_RS25925 0.31 -1.0 5,790,963 - PFLU_RS25925 0.65 +0.5 5,791,045 + +1.0 5,791,045 + +1.2 5,791,045 + +0.6 5,791,045 + -0.6 5,791,045 + -0.7 5,791,045 + -0.6 5,791,045 + -1.2 5,791,045 + -0.0 5,791,045 + +0.6 5,791,045 + -0.5 5,791,045 + +0.3 5,791,046 - +0.6 5,791,046 - -0.3 5,791,046 - +0.2 5,791,046 - +0.4
Or see this region's nucleotide sequence