Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01020

Experiment: LB outgrowth control more dilute start

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01015 and PFLU_RS01020 are separated by 53 nucleotidesPFLU_RS01020 and PFLU_RS01025 are separated by 179 nucleotides PFLU_RS01015: PFLU_RS01015 - PhnD/SsuA/transferrin family substrate-binding protein, at 226,226 to 227,227 _RS01015 PFLU_RS01020: PFLU_RS01020 - LysR family transcriptional regulator, at 227,281 to 228,201 _RS01020 PFLU_RS01025: PFLU_RS01025 - TauD/TfdA family dioxygenase, at 228,381 to 229,286 _RS01025 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 226.287 kb on + strandat 226.288 kb on - strandat 226.288 kb on - strandat 226.439 kb on + strand, within PFLU_RS01015at 226.439 kb on + strand, within PFLU_RS01015at 226.440 kb on - strand, within PFLU_RS01015at 226.440 kb on - strand, within PFLU_RS01015at 226.440 kb on - strand, within PFLU_RS01015at 226.440 kb on - strand, within PFLU_RS01015at 226.502 kb on + strand, within PFLU_RS01015at 226.503 kb on - strand, within PFLU_RS01015at 226.503 kb on - strand, within PFLU_RS01015at 226.503 kb on - strand, within PFLU_RS01015at 226.589 kb on + strand, within PFLU_RS01015at 226.589 kb on + strand, within PFLU_RS01015at 226.590 kb on - strand, within PFLU_RS01015at 226.590 kb on - strand, within PFLU_RS01015at 226.590 kb on - strand, within PFLU_RS01015at 226.748 kb on + strand, within PFLU_RS01015at 226.748 kb on + strand, within PFLU_RS01015at 226.748 kb on + strand, within PFLU_RS01015at 226.748 kb on + strand, within PFLU_RS01015at 226.749 kb on - strand, within PFLU_RS01015at 226.749 kb on - strand, within PFLU_RS01015at 226.749 kb on - strand, within PFLU_RS01015at 226.749 kb on - strand, within PFLU_RS01015at 226.845 kb on + strand, within PFLU_RS01015at 226.845 kb on + strand, within PFLU_RS01015at 226.845 kb on + strand, within PFLU_RS01015at 226.846 kb on - strand, within PFLU_RS01015at 226.846 kb on - strand, within PFLU_RS01015at 227.006 kb on + strand, within PFLU_RS01015at 227.006 kb on + strand, within PFLU_RS01015at 227.006 kb on + strand, within PFLU_RS01015at 227.006 kb on + strand, within PFLU_RS01015at 227.006 kb on + strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.007 kb on - strand, within PFLU_RS01015at 227.122 kb on + strand, within PFLU_RS01015at 227.630 kb on + strand, within PFLU_RS01020at 227.820 kb on + strand, within PFLU_RS01020at 227.820 kb on + strand, within PFLU_RS01020at 227.821 kb on - strand, within PFLU_RS01020at 227.821 kb on - strand, within PFLU_RS01020at 227.821 kb on - strand, within PFLU_RS01020at 228.180 kb on - strandat 228.180 kb on - strandat 228.202 kb on - strandat 228.202 kb on - strandat 228.202 kb on - strandat 228.202 kb on - strandat 228.219 kb on + strandat 228.219 kb on + strandat 228.219 kb on + strandat 228.220 kb on - strandat 228.220 kb on - strandat 228.226 kb on - strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.264 kb on - strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.397 kb on + strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.398 kb on - strandat 228.470 kb on + strandat 228.534 kb on + strand, within PFLU_RS01025at 228.534 kb on + strand, within PFLU_RS01025at 228.534 kb on + strand, within PFLU_RS01025at 228.535 kb on - strand, within PFLU_RS01025at 228.535 kb on - strand, within PFLU_RS01025at 228.758 kb on - strand, within PFLU_RS01025at 228.810 kb on + strand, within PFLU_RS01025at 228.810 kb on + strand, within PFLU_RS01025at 228.810 kb on + strand, within PFLU_RS01025at 228.810 kb on + strand, within PFLU_RS01025at 228.811 kb on - strand, within PFLU_RS01025at 228.811 kb on - strand, within PFLU_RS01025at 228.876 kb on + strand, within PFLU_RS01025at 228.876 kb on + strand, within PFLU_RS01025at 228.877 kb on - strand, within PFLU_RS01025at 228.954 kb on + strand, within PFLU_RS01025at 228.954 kb on + strand, within PFLU_RS01025at 228.954 kb on + strand, within PFLU_RS01025at 228.955 kb on - strand, within PFLU_RS01025at 229.044 kb on + strand, within PFLU_RS01025at 229.173 kb on + strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.174 kb on - strand, within PFLU_RS01025at 229.188 kb on + strand, within PFLU_RS01025at 229.189 kb on - strand, within PFLU_RS01025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB outgrowth control more dilute start
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226,287 + +1.3
226,288 - -0.9
226,288 - +0.3
226,439 + PFLU_RS01015 0.21 -0.4
226,439 + PFLU_RS01015 0.21 +0.6
226,440 - PFLU_RS01015 0.21 -0.7
226,440 - PFLU_RS01015 0.21 +0.5
226,440 - PFLU_RS01015 0.21 +0.3
226,440 - PFLU_RS01015 0.21 -0.5
226,502 + PFLU_RS01015 0.28 +0.1
226,503 - PFLU_RS01015 0.28 -0.9
226,503 - PFLU_RS01015 0.28 -2.3
226,503 - PFLU_RS01015 0.28 +1.1
226,589 + PFLU_RS01015 0.36 +0.1
226,589 + PFLU_RS01015 0.36 +0.2
226,590 - PFLU_RS01015 0.36 +1.3
226,590 - PFLU_RS01015 0.36 -1.4
226,590 - PFLU_RS01015 0.36 -0.8
226,748 + PFLU_RS01015 0.52 +0.9
226,748 + PFLU_RS01015 0.52 +0.0
226,748 + PFLU_RS01015 0.52 -0.4
226,748 + PFLU_RS01015 0.52 -0.2
226,749 - PFLU_RS01015 0.52 +0.0
226,749 - PFLU_RS01015 0.52 +2.2
226,749 - PFLU_RS01015 0.52 -0.7
226,749 - PFLU_RS01015 0.52 +0.3
226,845 + PFLU_RS01015 0.62 +0.5
226,845 + PFLU_RS01015 0.62 -0.7
226,845 + PFLU_RS01015 0.62 -0.6
226,846 - PFLU_RS01015 0.62 -1.4
226,846 - PFLU_RS01015 0.62 +1.6
227,006 + PFLU_RS01015 0.78 +0.3
227,006 + PFLU_RS01015 0.78 -0.6
227,006 + PFLU_RS01015 0.78 -1.4
227,006 + PFLU_RS01015 0.78 +0.4
227,006 + PFLU_RS01015 0.78 -0.4
227,007 - PFLU_RS01015 0.78 -0.1
227,007 - PFLU_RS01015 0.78 -0.4
227,007 - PFLU_RS01015 0.78 +0.5
227,007 - PFLU_RS01015 0.78 +0.1
227,007 - PFLU_RS01015 0.78 +1.3
227,007 - PFLU_RS01015 0.78 +1.0
227,007 - PFLU_RS01015 0.78 -1.4
227,007 - PFLU_RS01015 0.78 +1.3
227,007 - PFLU_RS01015 0.78 -0.8
227,007 - PFLU_RS01015 0.78 -0.3
227,122 + PFLU_RS01015 0.89 -0.7
227,630 + PFLU_RS01020 0.38 +0.2
227,820 + PFLU_RS01020 0.59 +1.5
227,820 + PFLU_RS01020 0.59 +1.0
227,821 - PFLU_RS01020 0.59 -1.1
227,821 - PFLU_RS01020 0.59 -0.5
227,821 - PFLU_RS01020 0.59 -0.3
228,180 - -0.3
228,180 - +0.4
228,202 - +0.6
228,202 - +0.6
228,202 - +1.3
228,202 - -1.3
228,219 + +1.6
228,219 + -1.1
228,219 + -0.1
228,220 - -0.4
228,220 - +1.1
228,226 - +0.6
228,263 + +0.3
228,263 + -0.6
228,263 + +0.4
228,263 + +0.3
228,263 + +1.2
228,263 + +0.8
228,264 - -0.7
228,397 + +0.5
228,397 + -0.6
228,397 + +0.3
228,397 + -0.4
228,397 + +0.7
228,397 + +0.9
228,397 + -1.1
228,397 + +1.3
228,397 + +1.0
228,397 + -0.2
228,397 + +0.7
228,397 + +1.3
228,397 + +0.5
228,398 - -0.4
228,398 - -0.3
228,398 - -1.0
228,398 - +0.1
228,398 - +0.6
228,398 - +0.6
228,398 - -0.2
228,398 - +0.9
228,398 - -0.4
228,470 + +0.2
228,534 + PFLU_RS01025 0.17 -0.6
228,534 + PFLU_RS01025 0.17 +0.3
228,534 + PFLU_RS01025 0.17 -1.5
228,535 - PFLU_RS01025 0.17 +0.5
228,535 - PFLU_RS01025 0.17 +1.8
228,758 - PFLU_RS01025 0.42 -0.2
228,810 + PFLU_RS01025 0.47 +0.8
228,810 + PFLU_RS01025 0.47 +0.7
228,810 + PFLU_RS01025 0.47 +0.5
228,810 + PFLU_RS01025 0.47 -0.0
228,811 - PFLU_RS01025 0.47 +0.6
228,811 - PFLU_RS01025 0.47 -2.6
228,876 + PFLU_RS01025 0.55 +0.0
228,876 + PFLU_RS01025 0.55 +0.2
228,877 - PFLU_RS01025 0.55 +1.1
228,954 + PFLU_RS01025 0.63 -0.2
228,954 + PFLU_RS01025 0.63 +0.3
228,954 + PFLU_RS01025 0.63 -1.1
228,955 - PFLU_RS01025 0.63 +0.4
229,044 + PFLU_RS01025 0.73 -1.3
229,173 + PFLU_RS01025 0.87 -0.9
229,174 - PFLU_RS01025 0.88 +0.7
229,174 - PFLU_RS01025 0.88 +0.9
229,174 - PFLU_RS01025 0.88 +0.0
229,174 - PFLU_RS01025 0.88 -1.5
229,174 - PFLU_RS01025 0.88 -0.6
229,174 - PFLU_RS01025 0.88 -1.0
229,174 - PFLU_RS01025 0.88 +0.1
229,174 - PFLU_RS01025 0.88 -0.0
229,188 + PFLU_RS01025 0.89 +0.2
229,189 - PFLU_RS01025 0.89 -0.3

Or see this region's nucleotide sequence