Experiment: Post-colonization (Day 2) - Cage1;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0598 and BT0599 are separated by 34 nucleotides BT0599 and BT0600 are separated by 4 nucleotides
BT0598: BT0598 - putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file), at 737,168 to 739,093
BT0598
BT0599: BT0599 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 739,128 to 740,444
BT0599
BT0600: BT0600 - nucleotide sugar epimerase (NCBI ptt file), at 740,449 to 741,513
BT0600
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.276 kb on - strand, within BT0598 at 738.289 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.867 kb on - strand, within BT0598 at 739.042 kb on - strand at 739.096 kb on - strand at 739.119 kb on - strand at 739.432 kb on + strand, within BT0599 at 739.432 kb on + strand, within BT0599 at 739.433 kb on - strand, within BT0599 at 739.483 kb on + strand, within BT0599 at 739.533 kb on + strand, within BT0599 at 739.611 kb on - strand, within BT0599 at 739.775 kb on + strand, within BT0599 at 739.829 kb on + strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 740.072 kb on + strand, within BT0599 at 740.108 kb on + strand, within BT0599 at 740.122 kb on - strand, within BT0599 at 740.418 kb on - strand at 740.458 kb on + strand at 740.594 kb on - strand, within BT0600 at 740.594 kb on - strand, within BT0600 at 740.753 kb on + strand, within BT0600 at 740.785 kb on - strand, within BT0600 at 740.820 kb on - strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.871 kb on + strand, within BT0600 at 740.902 kb on + strand, within BT0600 at 740.953 kb on - strand, within BT0600 at 740.970 kb on - strand, within BT0600 at 741.119 kb on - strand, within BT0600 at 741.145 kb on + strand, within BT0600 at 741.168 kb on + strand, within BT0600 at 741.242 kb on + strand, within BT0600 at 741.245 kb on - strand, within BT0600 at 741.246 kb on + strand, within BT0600 at 741.247 kb on - strand, within BT0600
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage1;Mouse5 remove 738,276 - BT0598 0.58 +0.2 738,289 - BT0598 0.58 +0.8 738,311 - BT0598 0.59 -1.1 738,311 - BT0598 0.59 -1.7 738,496 - BT0598 0.69 +1.1 738,496 - BT0598 0.69 -2.2 738,824 - BT0598 0.86 -0.2 738,824 - BT0598 0.86 -0.7 738,867 - BT0598 0.88 +0.1 739,042 - -1.2 739,096 - -0.5 739,119 - +0.5 739,432 + BT0599 0.23 -1.5 739,432 + BT0599 0.23 -0.8 739,433 - BT0599 0.23 -1.9 739,483 + BT0599 0.27 -1.5 739,533 + BT0599 0.31 -0.9 739,611 - BT0599 0.37 +0.1 739,775 + BT0599 0.49 -1.2 739,829 + BT0599 0.53 -0.3 739,833 - BT0599 0.54 -1.6 739,833 - BT0599 0.54 -0.5 739,878 + BT0599 0.57 +1.1 739,878 + BT0599 0.57 -1.9 740,072 + BT0599 0.72 -0.7 740,108 + BT0599 0.74 -1.7 740,122 - BT0599 0.75 +0.7 740,418 - +1.1 740,458 + +0.7 740,594 - BT0600 0.14 -3.1 740,594 - BT0600 0.14 -0.2 740,753 + BT0600 0.29 +0.8 740,785 - BT0600 0.32 -2.7 740,820 - BT0600 0.35 -1.2 740,857 + BT0600 0.38 -0.5 740,857 + BT0600 0.38 +0.3 740,871 + BT0600 0.40 -0.2 740,902 + BT0600 0.43 +2.1 740,953 - BT0600 0.47 -1.1 740,970 - BT0600 0.49 -0.5 741,119 - BT0600 0.63 +1.1 741,145 + BT0600 0.65 +0.8 741,168 + BT0600 0.68 -0.1 741,242 + BT0600 0.74 -2.1 741,245 - BT0600 0.75 -1.0 741,246 + BT0600 0.75 +0.4 741,247 - BT0600 0.75 +0.4
Or see this region's nucleotide sequence