Experiment: Post-colonization (Day 2) - Cage1;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0571 and BT0572 are separated by 125 nucleotides BT0572 and BT0573 are separated by 234 nucleotides
BT0571: BT0571 - phenylacetate-coenzyme A ligase (NCBI ptt file), at 707,810 to 709,108
BT0571
BT0572: BT0572 - conserved hypothetical protein (NCBI ptt file), at 709,234 to 709,659
BT0572
BT0573: BT0573 - conserved hypothetical protein (NCBI ptt file), at 709,894 to 710,697
BT0573
Position (kb) 709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 708.293 kb on - strand, within BT0571 at 708.293 kb on - strand, within BT0571 at 708.311 kb on - strand, within BT0571 at 708.359 kb on + strand, within BT0571 at 708.460 kb on + strand, within BT0571 at 708.505 kb on + strand, within BT0571 at 708.509 kb on + strand, within BT0571 at 708.662 kb on - strand, within BT0571 at 708.703 kb on + strand, within BT0571 at 708.728 kb on + strand, within BT0571 at 708.733 kb on + strand, within BT0571 at 708.794 kb on - strand, within BT0571 at 708.875 kb on + strand, within BT0571 at 708.968 kb on - strand, within BT0571 at 709.122 kb on + strand at 709.144 kb on + strand at 709.173 kb on + strand at 709.185 kb on - strand at 709.188 kb on - strand at 709.195 kb on - strand at 709.198 kb on + strand at 709.455 kb on + strand, within BT0572 at 709.456 kb on - strand, within BT0572 at 709.581 kb on + strand, within BT0572 at 709.582 kb on - strand, within BT0572 at 709.582 kb on - strand, within BT0572 at 709.711 kb on + strand at 709.723 kb on - strand at 709.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage1;Mouse5 remove 708,293 - BT0571 0.37 -2.9 708,293 - BT0571 0.37 -0.4 708,311 - BT0571 0.39 -1.9 708,359 + BT0571 0.42 -0.6 708,460 + BT0571 0.50 -0.0 708,505 + BT0571 0.54 -0.6 708,509 + BT0571 0.54 -1.7 708,662 - BT0571 0.66 -0.1 708,703 + BT0571 0.69 -0.1 708,728 + BT0571 0.71 -0.0 708,733 + BT0571 0.71 +0.2 708,794 - BT0571 0.76 -0.3 708,875 + BT0571 0.82 +0.1 708,968 - BT0571 0.89 -2.1 709,122 + -0.5 709,144 + +0.0 709,173 + -1.0 709,185 - -1.0 709,188 - +0.1 709,195 - -1.2 709,198 + +0.1 709,455 + BT0572 0.52 -1.1 709,456 - BT0572 0.52 -0.7 709,581 + BT0572 0.81 -2.4 709,582 - BT0572 0.82 -1.5 709,582 - BT0572 0.82 -2.2 709,711 + -0.6 709,723 - -1.6 709,767 + -0.4
Or see this region's nucleotide sequence