Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0045 and DVUA0046 overlap by 4 nucleotides DVUA0046 and DVUA0047 are separated by 75 nucleotides
DVUA0045: DVUA0045 - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 53,852 to 55,468
DVUA0045
DVUA0046: DVUA0046 - glycosyl transferase, group 2 family protein (TIGR), at 55,465 to 56,913
DVUA0046
DVUA0047: DVUA0047 - hypothetical protein (TIGR), at 56,989 to 58,305
DVUA0047
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 54.566 kb on + strand, within DVUA0045 at 54.566 kb on + strand, within DVUA0045 at 54.579 kb on - strand, within DVUA0045 at 54.667 kb on + strand, within DVUA0045 at 54.685 kb on - strand, within DVUA0045 at 54.735 kb on + strand, within DVUA0045 at 54.745 kb on + strand, within DVUA0045 at 54.745 kb on + strand, within DVUA0045 at 54.753 kb on - strand, within DVUA0045 at 54.753 kb on - strand, within DVUA0045 at 54.753 kb on - strand, within DVUA0045 at 54.753 kb on - strand, within DVUA0045 at 54.758 kb on - strand, within DVUA0045 at 54.768 kb on - strand, within DVUA0045 at 54.824 kb on + strand, within DVUA0045 at 54.826 kb on + strand, within DVUA0045 at 54.834 kb on - strand, within DVUA0045 at 54.904 kb on - strand, within DVUA0045 at 55.016 kb on + strand, within DVUA0045 at 55.149 kb on - strand, within DVUA0045 at 55.149 kb on - strand, within DVUA0045 at 55.149 kb on - strand, within DVUA0045 at 55.149 kb on - strand, within DVUA0045 at 55.198 kb on + strand, within DVUA0045 at 55.199 kb on + strand, within DVUA0045 at 55.501 kb on + strand at 55.642 kb on + strand, within DVUA0046 at 55.642 kb on + strand, within DVUA0046 at 55.665 kb on - strand, within DVUA0046 at 55.665 kb on - strand, within DVUA0046 at 55.665 kb on - strand, within DVUA0046 at 55.729 kb on + strand, within DVUA0046 at 55.749 kb on - strand, within DVUA0046 at 55.751 kb on + strand, within DVUA0046 at 55.829 kb on + strand, within DVUA0046 at 55.841 kb on + strand, within DVUA0046 at 55.849 kb on - strand, within DVUA0046 at 55.849 kb on - strand, within DVUA0046 at 55.981 kb on + strand, within DVUA0046 at 56.025 kb on + strand, within DVUA0046 at 56.162 kb on + strand, within DVUA0046 at 56.170 kb on - strand, within DVUA0046 at 56.229 kb on - strand, within DVUA0046 at 56.274 kb on + strand, within DVUA0046 at 56.274 kb on + strand, within DVUA0046 at 56.279 kb on + strand, within DVUA0046 at 56.279 kb on + strand, within DVUA0046 at 56.282 kb on + strand, within DVUA0046 at 56.356 kb on + strand, within DVUA0046 at 56.397 kb on + strand, within DVUA0046 at 56.635 kb on + strand, within DVUA0046 at 56.635 kb on + strand, within DVUA0046 at 56.643 kb on - strand, within DVUA0046 at 56.643 kb on - strand, within DVUA0046 at 56.643 kb on - strand, within DVUA0046 at 56.689 kb on - strand, within DVUA0046 at 56.710 kb on + strand, within DVUA0046 at 56.785 kb on + strand at 56.785 kb on + strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.890 kb on - strand at 56.971 kb on + strand at 57.230 kb on - strand, within DVUA0047 at 57.299 kb on - strand, within DVUA0047 at 57.526 kb on + strand, within DVUA0047 at 57.526 kb on + strand, within DVUA0047 at 57.562 kb on - strand, within DVUA0047 at 57.563 kb on - strand, within DVUA0047 at 57.611 kb on + strand, within DVUA0047 at 57.631 kb on + strand, within DVUA0047 at 57.736 kb on - strand, within DVUA0047 at 57.836 kb on - strand, within DVUA0047 at 57.853 kb on - strand, within DVUA0047 at 57.897 kb on - strand, within DVUA0047 at 57.897 kb on - strand, within DVUA0047
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 54,566 + DVUA0045 0.44 -0.1 54,566 + DVUA0045 0.44 -0.5 54,579 - DVUA0045 0.45 +0.4 54,667 + DVUA0045 0.50 +0.5 54,685 - DVUA0045 0.52 -2.6 54,735 + DVUA0045 0.55 +1.3 54,745 + DVUA0045 0.55 -1.1 54,745 + DVUA0045 0.55 -0.9 54,753 - DVUA0045 0.56 +1.3 54,753 - DVUA0045 0.56 -0.7 54,753 - DVUA0045 0.56 -0.7 54,753 - DVUA0045 0.56 +0.3 54,758 - DVUA0045 0.56 -0.4 54,768 - DVUA0045 0.57 -0.7 54,824 + DVUA0045 0.60 -0.1 54,826 + DVUA0045 0.60 -1.1 54,834 - DVUA0045 0.61 -0.7 54,904 - DVUA0045 0.65 -0.6 55,016 + DVUA0045 0.72 +0.4 55,149 - DVUA0045 0.80 -0.3 55,149 - DVUA0045 0.80 -1.2 55,149 - DVUA0045 0.80 -0.5 55,149 - DVUA0045 0.80 +0.4 55,198 + DVUA0045 0.83 -0.6 55,199 + DVUA0045 0.83 +0.2 55,501 + -0.2 55,642 + DVUA0046 0.12 +0.1 55,642 + DVUA0046 0.12 -1.1 55,665 - DVUA0046 0.14 +0.3 55,665 - DVUA0046 0.14 -0.7 55,665 - DVUA0046 0.14 -0.3 55,729 + DVUA0046 0.18 -0.8 55,749 - DVUA0046 0.20 -0.3 55,751 + DVUA0046 0.20 -0.7 55,829 + DVUA0046 0.25 +1.9 55,841 + DVUA0046 0.26 -0.7 55,849 - DVUA0046 0.27 +0.3 55,849 - DVUA0046 0.27 -0.5 55,981 + DVUA0046 0.36 -0.3 56,025 + DVUA0046 0.39 -1.1 56,162 + DVUA0046 0.48 -0.3 56,170 - DVUA0046 0.49 -0.3 56,229 - DVUA0046 0.53 -0.9 56,274 + DVUA0046 0.56 +0.3 56,274 + DVUA0046 0.56 -2.1 56,279 + DVUA0046 0.56 -1.1 56,279 + DVUA0046 0.56 -0.3 56,282 + DVUA0046 0.56 -1.7 56,356 + DVUA0046 0.61 -0.2 56,397 + DVUA0046 0.64 +4.6 56,635 + DVUA0046 0.81 -1.9 56,635 + DVUA0046 0.81 -0.3 56,643 - DVUA0046 0.81 +1.9 56,643 - DVUA0046 0.81 -0.7 56,643 - DVUA0046 0.81 -0.7 56,689 - DVUA0046 0.84 +0.3 56,710 + DVUA0046 0.86 -0.5 56,785 + +0.2 56,785 + +0.3 56,823 - -0.0 56,823 - -0.6 56,890 - +0.3 56,971 + +1.3 57,230 - DVUA0047 0.18 -0.6 57,299 - DVUA0047 0.24 +0.3 57,526 + DVUA0047 0.41 -0.7 57,526 + DVUA0047 0.41 -1.5 57,562 - DVUA0047 0.44 -0.5 57,563 - DVUA0047 0.44 +0.4 57,611 + DVUA0047 0.47 -0.1 57,631 + DVUA0047 0.49 +0.4 57,736 - DVUA0047 0.57 -2.3 57,836 - DVUA0047 0.64 +0.0 57,853 - DVUA0047 0.66 +1.3 57,897 - DVUA0047 0.69 -0.6 57,897 - DVUA0047 0.69 +1.9
Or see this region's nucleotide sequence