Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0511

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnusA and DVU0511 are separated by 40 nucleotidesDVU0511 and flgF are separated by 341 nucleotides DVU0510: nusA - N utilization substance protein A (TIGR), at 583,521 to 584,807 nusA DVU0511: DVU0511 - conserved hypothetical protein (TIGR), at 584,848 to 585,366 DVU0511 DVU0512: flgF - flagellar basal-body rod protein, putative (TIGR), at 585,708 to 586,490 flgF Position (kb) 584 585 586Strain fitness (log2 ratio) -1 0 1 2 3at 584.827 kb on + strandat 584.854 kb on - strandat 584.899 kb on - strandat 584.931 kb on - strand, within DVU0511at 585.088 kb on + strand, within DVU0511at 585.096 kb on - strand, within DVU0511at 585.096 kb on - strand, within DVU0511at 585.593 kb on - strandat 585.619 kb on - strandat 585.626 kb on + strandat 585.643 kb on + strandat 585.700 kb on - strandat 585.708 kb on + strandat 585.716 kb on - strandat 585.742 kb on - strandat 585.743 kb on + strandat 585.836 kb on + strand, within flgFat 585.838 kb on + strand, within flgFat 585.913 kb on - strand, within flgFat 585.920 kb on - strand, within flgFat 585.965 kb on + strand, within flgFat 586.029 kb on - strand, within flgFat 586.037 kb on - strand, within flgFat 586.097 kb on - strand, within flgFat 586.104 kb on + strand, within flgFat 586.163 kb on + strand, within flgFat 586.200 kb on - strand, within flgFat 586.207 kb on + strand, within flgFat 586.209 kb on - strand, within flgFat 586.209 kb on - strand, within flgFat 586.225 kb on - strand, within flgFat 586.269 kb on + strand, within flgFat 586.354 kb on + strand, within flgF

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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584,827 + -0.5
584,854 - -0.6
584,899 - -0.3
584,931 - DVU0511 0.16 -0.1
585,088 + DVU0511 0.46 +1.7
585,096 - DVU0511 0.48 +1.7
585,096 - DVU0511 0.48 -0.2
585,593 - +0.1
585,619 - -0.8
585,626 + -0.4
585,643 + -0.9
585,700 - +1.7
585,708 + +3.1
585,716 - +1.9
585,742 - +2.0
585,743 + +1.9
585,836 + flgF DVU0512 0.16 +1.7
585,838 + flgF DVU0512 0.17 +0.4
585,913 - flgF DVU0512 0.26 +2.1
585,920 - flgF DVU0512 0.27 +0.1
585,965 + flgF DVU0512 0.33 +1.7
586,029 - flgF DVU0512 0.41 +0.7
586,037 - flgF DVU0512 0.42 +1.3
586,097 - flgF DVU0512 0.50 +1.6
586,104 + flgF DVU0512 0.51 +1.6
586,163 + flgF DVU0512 0.58 +1.4
586,200 - flgF DVU0512 0.63 +1.9
586,207 + flgF DVU0512 0.64 +1.2
586,209 - flgF DVU0512 0.64 +1.0
586,209 - flgF DVU0512 0.64 +2.3
586,225 - flgF DVU0512 0.66 +1.2
586,269 + flgF DVU0512 0.72 +2.3
586,354 + flgF DVU0512 0.83 +1.8

Or see this region's nucleotide sequence