Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0138

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzupT and DVUA0137 are separated by 121 nucleotidesDVUA0137 and DVUA0138 overlap by 14 nucleotidesDVUA0138 and DVUA0139 are separated by 163 nucleotides DVUA0136: zupT - zinc transporter (TIGR), at 177,828 to 178,661 zupT DVUA0137: DVUA0137 - response regulator (TIGR), at 178,783 to 179,430 DVUA0137 DVUA0138: DVUA0138 - sensor histidine kinase (TIGR), at 179,417 to 181,501 DVUA0138 DVUA0139: DVUA0139 - outer membrane autotransporter barrel domain protein (TIGR), at 181,665 to 183,644 DVUA0139 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 178.428 kb on + strand, within zupTat 178.445 kb on + strand, within zupTat 178.453 kb on - strand, within zupTat 178.509 kb on + strand, within zupTat 178.543 kb on + strand, within zupTat 178.589 kb on + strandat 178.597 kb on - strandat 178.602 kb on + strandat 178.627 kb on - strandat 178.648 kb on - strandat 178.715 kb on + strandat 178.805 kb on + strandat 178.813 kb on - strandat 178.823 kb on - strandat 178.823 kb on - strandat 178.825 kb on - strandat 178.832 kb on - strandat 178.882 kb on - strand, within DVUA0137at 179.093 kb on + strand, within DVUA0137at 179.108 kb on - strand, within DVUA0137at 179.162 kb on + strand, within DVUA0137at 179.162 kb on + strand, within DVUA0137at 179.170 kb on - strand, within DVUA0137at 179.170 kb on - strand, within DVUA0137at 179.208 kb on + strand, within DVUA0137at 179.208 kb on + strand, within DVUA0137at 179.261 kb on - strand, within DVUA0137at 179.273 kb on + strand, within DVUA0137at 179.302 kb on + strand, within DVUA0137at 179.304 kb on - strand, within DVUA0137at 179.376 kb on - strandat 179.383 kb on - strandat 179.479 kb on + strandat 179.504 kb on + strandat 179.535 kb on + strandat 179.539 kb on + strandat 179.548 kb on - strandat 179.644 kb on + strand, within DVUA0138at 179.659 kb on + strand, within DVUA0138at 179.664 kb on + strand, within DVUA0138at 179.669 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.688 kb on + strand, within DVUA0138at 179.696 kb on - strand, within DVUA0138at 179.725 kb on - strand, within DVUA0138at 179.726 kb on + strand, within DVUA0138at 179.736 kb on + strand, within DVUA0138at 179.741 kb on + strand, within DVUA0138at 179.744 kb on - strand, within DVUA0138at 179.748 kb on - strand, within DVUA0138at 179.819 kb on - strand, within DVUA0138at 179.842 kb on - strand, within DVUA0138at 179.946 kb on - strand, within DVUA0138at 179.948 kb on + strand, within DVUA0138at 179.960 kb on + strand, within DVUA0138at 180.020 kb on - strand, within DVUA0138at 180.046 kb on + strand, within DVUA0138at 180.046 kb on + strand, within DVUA0138at 180.046 kb on + strand, within DVUA0138at 180.054 kb on - strand, within DVUA0138at 180.125 kb on + strand, within DVUA0138at 180.220 kb on + strand, within DVUA0138at 180.273 kb on + strand, within DVUA0138at 180.279 kb on + strand, within DVUA0138at 180.279 kb on + strand, within DVUA0138at 180.316 kb on - strand, within DVUA0138at 180.340 kb on + strand, within DVUA0138at 180.343 kb on - strand, within DVUA0138at 180.412 kb on - strand, within DVUA0138at 180.494 kb on - strand, within DVUA0138at 180.514 kb on + strand, within DVUA0138at 180.514 kb on + strand, within DVUA0138at 180.529 kb on - strand, within DVUA0138at 180.537 kb on - strand, within DVUA0138at 180.568 kb on - strand, within DVUA0138at 180.616 kb on - strand, within DVUA0138at 180.699 kb on + strand, within DVUA0138at 180.712 kb on - strand, within DVUA0138at 180.722 kb on - strand, within DVUA0138at 180.729 kb on - strand, within DVUA0138at 180.740 kb on + strand, within DVUA0138at 180.762 kb on + strand, within DVUA0138at 180.763 kb on - strand, within DVUA0138at 180.789 kb on + strand, within DVUA0138at 180.791 kb on + strand, within DVUA0138at 180.815 kb on - strand, within DVUA0138at 180.826 kb on + strand, within DVUA0138at 180.830 kb on - strand, within DVUA0138at 180.834 kb on - strand, within DVUA0138at 180.839 kb on - strand, within DVUA0138at 180.848 kb on + strand, within DVUA0138at 180.915 kb on - strand, within DVUA0138at 180.951 kb on - strand, within DVUA0138at 180.971 kb on + strand, within DVUA0138at 181.001 kb on - strand, within DVUA0138at 181.054 kb on + strand, within DVUA0138at 181.060 kb on + strand, within DVUA0138at 181.068 kb on - strand, within DVUA0138at 181.083 kb on - strand, within DVUA0138at 181.117 kb on - strand, within DVUA0138at 181.129 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.272 kb on - strand, within DVUA0138at 181.334 kb on + strandat 181.389 kb on + strandat 181.424 kb on - strandat 181.496 kb on + strandat 181.580 kb on - strandat 181.621 kb on + strandat 181.636 kb on - strandat 181.642 kb on - strandat 181.659 kb on - strandat 181.713 kb on + strandat 181.736 kb on + strandat 181.876 kb on - strand, within DVUA0139at 181.933 kb on + strand, within DVUA0139at 181.968 kb on - strand, within DVUA0139at 181.981 kb on + strand, within DVUA0139at 182.005 kb on + strand, within DVUA0139at 182.074 kb on - strand, within DVUA0139at 182.103 kb on - strand, within DVUA0139at 182.184 kb on + strand, within DVUA0139at 182.216 kb on - strand, within DVUA0139at 182.229 kb on + strand, within DVUA0139at 182.237 kb on - strand, within DVUA0139at 182.267 kb on + strand, within DVUA0139at 182.297 kb on + strand, within DVUA0139at 182.394 kb on + strand, within DVUA0139at 182.397 kb on - strand, within DVUA0139at 182.404 kb on + strand, within DVUA0139at 182.404 kb on + strand, within DVUA0139at 182.411 kb on + strand, within DVUA0139

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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178,428 + zupT DVUA0136 0.72 +1.3
178,445 + zupT DVUA0136 0.74 +0.1
178,453 - zupT DVUA0136 0.75 +2.3
178,509 + zupT DVUA0136 0.82 -0.3
178,543 + zupT DVUA0136 0.86 +2.3
178,589 + -0.3
178,597 - -0.4
178,602 + -0.1
178,627 - -0.7
178,648 - -0.9
178,715 + -0.8
178,805 + -1.3
178,813 - -0.9
178,823 - -1.1
178,823 - +0.3
178,825 - -0.5
178,832 - +1.3
178,882 - DVUA0137 0.15 -0.6
179,093 + DVUA0137 0.48 +1.3
179,108 - DVUA0137 0.50 -0.7
179,162 + DVUA0137 0.58 -1.1
179,162 + DVUA0137 0.58 -0.5
179,170 - DVUA0137 0.60 +1.0
179,170 - DVUA0137 0.60 -1.1
179,208 + DVUA0137 0.66 -0.5
179,208 + DVUA0137 0.66 +0.3
179,261 - DVUA0137 0.74 -0.4
179,273 + DVUA0137 0.76 -1.3
179,302 + DVUA0137 0.80 +0.1
179,304 - DVUA0137 0.80 -0.3
179,376 - +0.7
179,383 - +0.7
179,479 + +0.5
179,504 + +2.3
179,535 + -1.0
179,539 + -0.3
179,548 - +1.3
179,644 + DVUA0138 0.11 -0.2
179,659 + DVUA0138 0.12 -0.8
179,664 + DVUA0138 0.12 +0.3
179,669 + DVUA0138 0.12 +2.3
179,688 + DVUA0138 0.13 -0.7
179,688 + DVUA0138 0.13 +2.3
179,688 + DVUA0138 0.13 +0.3
179,688 + DVUA0138 0.13 -0.9
179,688 + DVUA0138 0.13 -0.7
179,688 + DVUA0138 0.13 -0.6
179,688 + DVUA0138 0.13 +1.6
179,696 - DVUA0138 0.13 +0.1
179,725 - DVUA0138 0.15 +1.3
179,726 + DVUA0138 0.15 -0.7
179,736 + DVUA0138 0.15 +0.7
179,741 + DVUA0138 0.16 -0.5
179,744 - DVUA0138 0.16 +0.3
179,748 - DVUA0138 0.16 -0.1
179,819 - DVUA0138 0.19 -0.3
179,842 - DVUA0138 0.20 +1.3
179,946 - DVUA0138 0.25 -0.7
179,948 + DVUA0138 0.25 +0.4
179,960 + DVUA0138 0.26 -0.3
180,020 - DVUA0138 0.29 +1.3
180,046 + DVUA0138 0.30 +2.3
180,046 + DVUA0138 0.30 +1.3
180,046 + DVUA0138 0.30 +0.7
180,054 - DVUA0138 0.31 -1.4
180,125 + DVUA0138 0.34 +2.4
180,220 + DVUA0138 0.39 +0.4
180,273 + DVUA0138 0.41 +1.3
180,279 + DVUA0138 0.41 +0.2
180,279 + DVUA0138 0.41 +2.3
180,316 - DVUA0138 0.43 -0.2
180,340 + DVUA0138 0.44 -0.8
180,343 - DVUA0138 0.44 +1.3
180,412 - DVUA0138 0.48 +0.2
180,494 - DVUA0138 0.52 +0.7
180,514 + DVUA0138 0.53 -0.9
180,514 + DVUA0138 0.53 -1.1
180,529 - DVUA0138 0.53 -1.3
180,537 - DVUA0138 0.54 +0.7
180,568 - DVUA0138 0.55 +0.7
180,616 - DVUA0138 0.58 +1.7
180,699 + DVUA0138 0.61 -0.1
180,712 - DVUA0138 0.62 -0.4
180,722 - DVUA0138 0.63 +0.6
180,729 - DVUA0138 0.63 +0.6
180,740 + DVUA0138 0.63 +0.4
180,762 + DVUA0138 0.65 -0.7
180,763 - DVUA0138 0.65 -1.0
180,789 + DVUA0138 0.66 -0.7
180,791 + DVUA0138 0.66 +0.3
180,815 - DVUA0138 0.67 -0.6
180,826 + DVUA0138 0.68 -0.0
180,830 - DVUA0138 0.68 -0.0
180,834 - DVUA0138 0.68 -1.6
180,839 - DVUA0138 0.68 +1.3
180,848 + DVUA0138 0.69 -1.8
180,915 - DVUA0138 0.72 -1.1
180,951 - DVUA0138 0.74 +1.3
180,971 + DVUA0138 0.75 -0.5
181,001 - DVUA0138 0.76 -0.6
181,054 + DVUA0138 0.79 +2.3
181,060 + DVUA0138 0.79 -0.9
181,068 - DVUA0138 0.79 -0.4
181,083 - DVUA0138 0.80 -0.4
181,117 - DVUA0138 0.82 +1.4
181,129 + DVUA0138 0.82 -1.3
181,249 + DVUA0138 0.88 +0.5
181,249 + DVUA0138 0.88 -0.3
181,249 + DVUA0138 0.88 -2.0
181,249 + DVUA0138 0.88 -1.1
181,257 - DVUA0138 0.88 -0.9
181,257 - DVUA0138 0.88 -0.7
181,257 - DVUA0138 0.88 -0.6
181,257 - DVUA0138 0.88 +1.3
181,272 - DVUA0138 0.89 -0.6
181,334 + +2.3
181,389 + -1.7
181,424 - -0.2
181,496 + -0.2
181,580 - +1.3
181,621 + +1.3
181,636 - -0.5
181,642 - -0.9
181,659 - -0.6
181,713 + +1.3
181,736 + +0.3
181,876 - DVUA0139 0.11 +0.1
181,933 + DVUA0139 0.14 -0.5
181,968 - DVUA0139 0.15 +1.7
181,981 + DVUA0139 0.16 +1.1
182,005 + DVUA0139 0.17 +1.3
182,074 - DVUA0139 0.21 +2.0
182,103 - DVUA0139 0.22 +0.7
182,184 + DVUA0139 0.26 +1.3
182,216 - DVUA0139 0.28 -0.5
182,229 + DVUA0139 0.28 +0.0
182,237 - DVUA0139 0.29 +0.0
182,267 + DVUA0139 0.30 +0.3
182,297 + DVUA0139 0.32 +0.2
182,394 + DVUA0139 0.37 -0.7
182,397 - DVUA0139 0.37 +2.3
182,404 + DVUA0139 0.37 -0.1
182,404 + DVUA0139 0.37 +0.7
182,411 + DVUA0139 0.38 +1.3

Or see this region's nucleotide sequence