Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3208

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3207 and DVU3208 are separated by 21 nucleotidesDVU3208 and thrC are separated by 132 nucleotides DVU3207: DVU3207 - RNB-like family protein (TIGR), at 3,372,044 to 3,374,140 DVU3207 DVU3208: DVU3208 - membrane protein, putative (TIGR), at 3,374,162 to 3,375,145 DVU3208 DVU3210: thrC - threonine synthase (TIGR), at 3,375,278 to 3,376,726 thrC Position (kb) 3374 3375 3376Strain fitness (log2 ratio) -1 0 1at 3374.772 kb on + strand, within DVU3208at 3374.968 kb on - strand, within DVU3208at 3375.007 kb on + strand, within DVU3208at 3375.015 kb on - strand, within DVU3208at 3375.170 kb on + strandat 3375.178 kb on + strandat 3375.236 kb on - strandat 3375.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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3,374,772 + DVU3208 0.62 -0.7
3,374,968 - DVU3208 0.82 -1.5
3,375,007 + DVU3208 0.86 -0.6
3,375,015 - DVU3208 0.87 -0.3
3,375,170 + -0.4
3,375,178 + +0.1
3,375,236 - -1.2
3,375,269 + +0.8

Or see this region's nucleotide sequence