Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4276

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4275 and Psyr_4276 are separated by 196 nucleotidesPsyr_4276 and Psyr_4277 are separated by 190 nucleotides Psyr_4275: Psyr_4275 - DNA replication and repair protein RadA, at 5,099,513 to 5,100,880 _4275 Psyr_4276: Psyr_4276 - Large-conductance mechanosensitive channel, at 5,101,077 to 5,101,523 _4276 Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490 _4277 Position (kb) 5101 5102Strain fitness (log2 ratio) -2 -1 0 1 2at 5100.168 kb on + strand, within Psyr_4275at 5100.168 kb on + strand, within Psyr_4275at 5100.168 kb on + strand, within Psyr_4275at 5100.168 kb on + strand, within Psyr_4275at 5100.169 kb on - strand, within Psyr_4275at 5100.169 kb on - strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.513 kb on + strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.514 kb on - strand, within Psyr_4275at 5100.858 kb on + strandat 5100.859 kb on - strandat 5100.859 kb on - strandat 5100.859 kb on - strandat 5100.977 kb on - strandat 5100.977 kb on - strandat 5101.022 kb on + strandat 5101.022 kb on + strandat 5101.022 kb on + strandat 5101.022 kb on + strandat 5101.023 kb on + strandat 5101.023 kb on - strandat 5101.023 kb on - strandat 5101.033 kb on + strandat 5101.054 kb on + strandat 5101.055 kb on - strandat 5101.061 kb on + strandat 5101.061 kb on + strandat 5101.062 kb on - strandat 5101.071 kb on + strandat 5101.071 kb on + strandat 5101.071 kb on + strandat 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.123 kb on + strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.124 kb on - strand, within Psyr_4276at 5101.142 kb on + strand, within Psyr_4276at 5101.143 kb on - strand, within Psyr_4276at 5101.145 kb on + strand, within Psyr_4276at 5101.145 kb on + strand, within Psyr_4276at 5101.146 kb on - strand, within Psyr_4276at 5101.351 kb on + strand, within Psyr_4276at 5101.351 kb on + strand, within Psyr_4276at 5101.352 kb on - strand, within Psyr_4276at 5101.515 kb on - strandat 5101.660 kb on + strandat 5101.660 kb on + strandat 5101.668 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.721 kb on + strandat 5101.722 kb on - strandat 5101.722 kb on - strandat 5101.905 kb on + strand, within Psyr_4277at 5101.905 kb on + strand, within Psyr_4277at 5101.906 kb on - strand, within Psyr_4277at 5101.906 kb on - strand, within Psyr_4277at 5101.973 kb on + strand, within Psyr_4277at 5101.986 kb on - strand, within Psyr_4277at 5102.022 kb on - strand, within Psyr_4277at 5102.051 kb on + strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.052 kb on - strand, within Psyr_4277at 5102.318 kb on + strand, within Psyr_4277at 5102.319 kb on - strand, within Psyr_4277at 5102.319 kb on - strand, within Psyr_4277at 5102.329 kb on + strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.330 kb on - strand, within Psyr_4277at 5102.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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5,100,168 + Psyr_4275 0.48 +0.9
5,100,168 + Psyr_4275 0.48 +0.0
5,100,168 + Psyr_4275 0.48 -0.9
5,100,168 + Psyr_4275 0.48 -2.2
5,100,169 - Psyr_4275 0.48 -0.4
5,100,169 - Psyr_4275 0.48 -0.3
5,100,513 + Psyr_4275 0.73 -2.0
5,100,513 + Psyr_4275 0.73 +0.2
5,100,513 + Psyr_4275 0.73 +0.1
5,100,513 + Psyr_4275 0.73 -1.8
5,100,513 + Psyr_4275 0.73 -0.5
5,100,513 + Psyr_4275 0.73 -0.0
5,100,513 + Psyr_4275 0.73 -0.1
5,100,513 + Psyr_4275 0.73 +0.1
5,100,514 - Psyr_4275 0.73 -0.1
5,100,514 - Psyr_4275 0.73 +0.7
5,100,514 - Psyr_4275 0.73 -1.0
5,100,514 - Psyr_4275 0.73 +0.7
5,100,514 - Psyr_4275 0.73 -0.6
5,100,514 - Psyr_4275 0.73 +0.5
5,100,514 - Psyr_4275 0.73 -0.9
5,100,514 - Psyr_4275 0.73 +0.3
5,100,514 - Psyr_4275 0.73 +0.7
5,100,514 - Psyr_4275 0.73 +0.7
5,100,514 - Psyr_4275 0.73 -0.1
5,100,858 + -0.2
5,100,859 - +1.1
5,100,859 - -1.3
5,100,859 - -1.9
5,100,977 - +0.1
5,100,977 - -0.4
5,101,022 + -1.3
5,101,022 + -0.3
5,101,022 + +0.2
5,101,022 + +0.2
5,101,023 + -1.4
5,101,023 - -0.3
5,101,023 - +0.7
5,101,033 + -1.8
5,101,054 + -0.5
5,101,055 - +0.3
5,101,061 + +0.1
5,101,061 + +0.6
5,101,062 - +1.9
5,101,071 + +0.8
5,101,071 + -0.0
5,101,071 + +0.1
5,101,123 + Psyr_4276 0.10 -0.9
5,101,123 + Psyr_4276 0.10 -0.0
5,101,123 + Psyr_4276 0.10 -0.4
5,101,123 + Psyr_4276 0.10 -0.4
5,101,123 + Psyr_4276 0.10 -0.5
5,101,123 + Psyr_4276 0.10 -0.4
5,101,123 + Psyr_4276 0.10 -0.7
5,101,123 + Psyr_4276 0.10 +0.3
5,101,123 + Psyr_4276 0.10 -0.4
5,101,123 + Psyr_4276 0.10 +0.9
5,101,123 + Psyr_4276 0.10 +1.1
5,101,123 + Psyr_4276 0.10 -0.1
5,101,124 - Psyr_4276 0.11 -0.7
5,101,124 - Psyr_4276 0.11 -0.3
5,101,124 - Psyr_4276 0.11 -0.1
5,101,124 - Psyr_4276 0.11 -1.4
5,101,124 - Psyr_4276 0.11 -1.0
5,101,124 - Psyr_4276 0.11 +0.2
5,101,124 - Psyr_4276 0.11 +0.3
5,101,124 - Psyr_4276 0.11 +0.7
5,101,124 - Psyr_4276 0.11 +1.3
5,101,124 - Psyr_4276 0.11 +0.9
5,101,124 - Psyr_4276 0.11 -1.0
5,101,124 - Psyr_4276 0.11 +0.7
5,101,142 + Psyr_4276 0.15 -0.3
5,101,143 - Psyr_4276 0.15 -0.8
5,101,145 + Psyr_4276 0.15 -1.7
5,101,145 + Psyr_4276 0.15 +0.4
5,101,146 - Psyr_4276 0.15 +0.0
5,101,351 + Psyr_4276 0.61 -0.5
5,101,351 + Psyr_4276 0.61 -0.5
5,101,352 - Psyr_4276 0.62 -1.2
5,101,515 - -1.3
5,101,660 + +1.3
5,101,660 + +1.1
5,101,668 + -1.1
5,101,721 + -0.7
5,101,721 + -0.2
5,101,721 + +0.1
5,101,721 + -0.6
5,101,721 + +0.8
5,101,721 + -0.3
5,101,721 + -0.4
5,101,721 + +0.2
5,101,721 + +0.4
5,101,721 + +0.7
5,101,721 + -1.0
5,101,722 - -0.0
5,101,722 - +1.3
5,101,905 + Psyr_4277 0.25 -0.4
5,101,905 + Psyr_4277 0.25 -1.1
5,101,906 - Psyr_4277 0.25 +0.2
5,101,906 - Psyr_4277 0.25 -0.8
5,101,973 + Psyr_4277 0.33 -0.6
5,101,986 - Psyr_4277 0.35 +0.5
5,102,022 - Psyr_4277 0.40 -0.4
5,102,051 + Psyr_4277 0.43 +0.2
5,102,052 - Psyr_4277 0.44 +0.2
5,102,052 - Psyr_4277 0.44 +0.1
5,102,052 - Psyr_4277 0.44 -0.1
5,102,052 - Psyr_4277 0.44 +1.5
5,102,052 - Psyr_4277 0.44 +0.2
5,102,052 - Psyr_4277 0.44 +0.5
5,102,052 - Psyr_4277 0.44 +0.6
5,102,318 + Psyr_4277 0.78 +0.6
5,102,319 - Psyr_4277 0.78 +0.3
5,102,319 - Psyr_4277 0.78 +0.2
5,102,329 + Psyr_4277 0.79 +0.8
5,102,330 - Psyr_4277 0.79 +0.7
5,102,330 - Psyr_4277 0.79 +0.3
5,102,330 - Psyr_4277 0.79 +0.5
5,102,512 + -0.6

Or see this region's nucleotide sequence