Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4893

Experiment: TIme6-nophage

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TIme6-nophage
5,804,820	-		Psyr_4892	0.39	+0.9
5,804,909	+		Psyr_4892	0.44	+0.4
5,804,910	-		Psyr_4892	0.44	-0.3
5,804,917	+		Psyr_4892	0.45	-0.1
5,804,919	+		Psyr_4892	0.45	-0.3
5,804,920	-		Psyr_4892	0.45	+1.5
5,804,920	-		Psyr_4892	0.45	+0.3
5,804,920	-		Psyr_4892	0.45	+0.1
5,804,920	-		Psyr_4892	0.45	+0.0
5,804,920	-		Psyr_4892	0.45	-0.1
5,805,043	+		Psyr_4892	0.53	-1.5
5,805,043	+		Psyr_4892	0.53	+0.2
5,805,043	+		Psyr_4892	0.53	-0.3
5,805,043	+		Psyr_4892	0.53	+0.3
5,805,043	+		Psyr_4892	0.53	-1.3
5,805,043	+		Psyr_4892	0.53	-0.3
5,805,043	+		Psyr_4892	0.53	-0.1
5,805,044	-		Psyr_4892	0.53	-0.5
5,805,044	-		Psyr_4892	0.53	-0.5
5,805,044	-		Psyr_4892	0.53	+0.5
5,805,044	-		Psyr_4892	0.53	+0.0
5,805,044	-		Psyr_4892	0.53	+0.2
5,805,044	-		Psyr_4892	0.53	-0.4
5,805,044	-		Psyr_4892	0.53	+0.6
5,805,044	-		Psyr_4892	0.53	-0.3
5,805,044	-		Psyr_4892	0.53	+0.5
5,805,044	-		Psyr_4892	0.53	+0.3
5,805,120	-		Psyr_4892	0.58	+0.2
5,805,120	-		Psyr_4892	0.58	+0.0
5,805,169	+		Psyr_4892	0.61	-0.7
5,805,169	+		Psyr_4892	0.61	-0.3
5,805,169	+		Psyr_4892	0.61	+0.7
5,805,169	+		Psyr_4892	0.61	+0.0
5,805,169	+		Psyr_4892	0.61	+0.2
5,805,169	+		Psyr_4892	0.61	-0.1
5,805,169	+		Psyr_4892	0.61	+0.3
5,805,169	+		Psyr_4892	0.61	-0.8
5,805,169	+		Psyr_4892	0.61	+0.5
5,805,170	-		Psyr_4892	0.61	-0.8
5,805,170	-		Psyr_4892	0.61	+0.4
5,805,170	-		Psyr_4892	0.61	-0.1
5,805,170	-		Psyr_4892	0.61	-1.8
5,805,170	-		Psyr_4892	0.61	-1.0
5,805,170	-		Psyr_4892	0.61	+1.0
5,805,170	-		Psyr_4892	0.61	-0.2
5,805,170	-		Psyr_4892	0.61	-0.3
5,805,170	-		Psyr_4892	0.61	+1.9
5,805,170	-		Psyr_4892	0.61	-0.6
5,805,240	+		Psyr_4892	0.66	-0.8
5,805,241	-		Psyr_4892	0.66	+0.6
5,805,241	-		Psyr_4892	0.66	-0.3
5,805,241	-		Psyr_4892	0.66	-1.1
5,805,241	-		Psyr_4892	0.66	-0.5
5,805,271	-		Psyr_4892	0.68	-0.7
5,805,303	+		Psyr_4892	0.70	+2.6
5,805,303	+		Psyr_4892	0.70	-0.7
5,805,303	+		Psyr_4892	0.70	+0.9
5,805,303	+		Psyr_4892	0.70	-0.6
5,805,303	+		Psyr_4892	0.70	+0.0
5,805,303	+		Psyr_4892	0.70	-0.2
5,805,304	-		Psyr_4892	0.70	-1.0
5,805,304	-		Psyr_4892	0.70	-0.1
5,805,304	-		Psyr_4892	0.70	-0.5
5,805,333	+		Psyr_4892	0.72	+0.2
5,805,333	+		Psyr_4892	0.72	-1.5
5,805,333	+		Psyr_4892	0.72	-0.2
5,805,334	-		Psyr_4892	0.72	+0.3
5,805,367	+		Psyr_4892	0.74	-0.7
5,805,397	-		Psyr_4892	0.76	+0.2
5,805,397	-		Psyr_4892	0.76	+0.5
5,805,485	+		Psyr_4892	0.82	-0.4
5,805,485	+		Psyr_4892	0.82	-0.1
5,805,485	+		Psyr_4892	0.82	-0.8
5,805,485	+		Psyr_4892	0.82	-0.7
5,805,485	+		Psyr_4892	0.82	+1.0
5,805,485	+		Psyr_4892	0.82	+0.1
5,805,485	+		Psyr_4892	0.82	+0.2
5,805,486	-		Psyr_4892	0.82	-0.5
5,805,486	-		Psyr_4892	0.82	-1.0
5,805,486	-		Psyr_4892	0.82	+1.0
5,805,486	-		Psyr_4892	0.82	-0.2
5,805,486	-		Psyr_4892	0.82	-0.2
5,805,486	-		Psyr_4892	0.82	-0.5
5,805,486	-		Psyr_4892	0.82	-0.8
5,805,486	-		Psyr_4892	0.82	-1.4
5,805,522	-		Psyr_4892	0.84	-0.7
5,805,522	-		Psyr_4892	0.84	+0.1
5,805,611	-				-0.5
5,805,623	-				+0.3
5,805,623	-				-0.8
5,805,623	-				-0.0
5,805,625	+				-0.7
5,805,625	+				-0.3
5,805,625	+				-0.3
5,805,625	+				+0.2
5,805,625	+				+2.3
5,805,626	-				+0.2
5,805,626	-				-0.6
5,805,626	-				-0.2
5,805,723	-				-0.5
5,805,765	+				-0.2
5,805,850	+				-1.8
5,805,850	+				-3.1
5,805,850	+				-1.3
5,805,850	+				+1.6
5,805,850	+				-3.0
5,805,850	+				-2.0
5,805,850	+				-2.7
5,805,851	-				-2.0
5,805,851	-				-2.3
5,805,851	-				-2.1
5,805,851	-				-2.3
5,805,874	+				-3.4
5,805,875	-				-1.8
5,805,893	+				-0.5
5,806,394	+		Psyr_4893	0.75	-2.5
5,806,394	+		Psyr_4893	0.75	-4.0
5,806,667	+				-3.1
5,806,667	+				-3.5
5,806,667	+				-2.9
5,806,668	-				-0.5
5,806,851	-		Psyr_4894	0.33	-2.9
5,806,851	-		Psyr_4894	0.33	-4.0
5,807,048	+		Psyr_4894	0.59	-2.3
5,807,048	+		Psyr_4894	0.59	-2.9
5,807,048	+		Psyr_4894	0.59	-1.8
5,807,049	-		Psyr_4894	0.60	-1.5
5,807,049	-		Psyr_4894	0.60	-3.0
5,807,049	-		Psyr_4894	0.60	-1.0
5,807,049	-		Psyr_4894	0.60	-1.5
5,807,049	-		Psyr_4894	0.60	-2.8
5,807,049	-		Psyr_4894	0.60	-3.1
5,807,069	+		Psyr_4894	0.62	-2.3
5,807,069	+		Psyr_4894	0.62	-3.0
5,807,069	+		Psyr_4894	0.62	-3.3
5,807,069	+		Psyr_4894	0.62	-3.9
5,807,070	-		Psyr_4894	0.62	-3.6
5,807,070	-		Psyr_4894	0.62	-2.5
5,807,070	-		Psyr_4894	0.62	-1.2
5,807,070	-		Psyr_4894	0.62	-3.3
5,807,350	+				+0.0
5,807,351	-				-3.2
5,807,351	-				-2.9
5,807,351	-				-1.8
5,807,351	-				-2.1
5,807,398	+				-3.2
5,807,398	+				-2.0
5,807,398	+				-3.5
5,807,398	+				-3.2
5,807,398	+				-3.4
5,807,399	-				+0.5
5,807,399	-				-0.3
5,807,399	-				+0.2
5,807,399	-				-0.3
5,807,399	-				+0.6
5,807,404	+				-3.7
5,807,404	+				-2.1
5,807,404	+				-3.0
5,807,451	-				-1.9
5,807,451	-				+0.6
5,807,451	-				-0.4
5,807,451	-				-0.7
5,807,454	+				-3.0
5,807,454	+				+1.0
5,807,455	-				+1.6
5,807,455	-				-0.5
5,807,541	+		Psyr_4895	0.32	-2.3
5,807,541	+		Psyr_4895	0.32	-2.9
5,807,541	+		Psyr_4895	0.32	-2.1
5,807,542	-		Psyr_4895	0.32	-0.8
5,807,544	+		Psyr_4895	0.33	+0.0
5,807,545	-		Psyr_4895	0.33	-0.3
5,807,545	-		Psyr_4895	0.33	+0.9