Experiment: CPG with phosphorous 0.063 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08545 and RALBFv3_RS08550 are separated by 31 nucleotides RALBFv3_RS08550 and RALBFv3_RS08555 are separated by 7 nucleotides RALBFv3_RS08555 and RALBFv3_RS08560 are separated by 34 nucleotides RALBFv3_RS08560 and RALBFv3_RS08565 overlap by 23 nucleotides
RALBFv3_RS08545: RALBFv3_RS08545 - C4-dicarboxylate transporter DctA, at 1,880,426 to 1,881,766
_RS08545
RALBFv3_RS08550: RALBFv3_RS08550 - GntR family transcriptional regulator, at 1,881,798 to 1,882,487
_RS08550
RALBFv3_RS08555: RALBFv3_RS08555 - DUF1949 domain-containing protein, at 1,882,495 to 1,883,082
_RS08555
RALBFv3_RS08560: RALBFv3_RS08560 - XRE family transcriptional regulator, at 1,883,117 to 1,883,449
_RS08560
RALBFv3_RS08565: RALBFv3_RS08565 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,883,427 to 1,883,699
_RS08565
Position (kb) 1881
1882
1883 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1881.062 kb on + strand, within RALBFv3_RS08545 at 1881.110 kb on + strand, within RALBFv3_RS08545 at 1881.111 kb on - strand, within RALBFv3_RS08545 at 1881.111 kb on - strand, within RALBFv3_RS08545 at 1881.111 kb on - strand, within RALBFv3_RS08545 at 1881.353 kb on + strand, within RALBFv3_RS08545 at 1881.354 kb on - strand, within RALBFv3_RS08545 at 1881.354 kb on - strand, within RALBFv3_RS08545 at 1881.354 kb on - strand, within RALBFv3_RS08545 at 1882.299 kb on + strand, within RALBFv3_RS08550 at 1882.299 kb on + strand, within RALBFv3_RS08550 at 1882.299 kb on + strand, within RALBFv3_RS08550 at 1882.299 kb on + strand at 1882.300 kb on - strand, within RALBFv3_RS08550 at 1882.300 kb on - strand, within RALBFv3_RS08550 at 1882.300 kb on - strand, within RALBFv3_RS08550 at 1882.311 kb on + strand, within RALBFv3_RS08550 at 1882.311 kb on + strand, within RALBFv3_RS08550 at 1882.311 kb on + strand, within RALBFv3_RS08550 at 1882.311 kb on + strand, within RALBFv3_RS08550 at 1882.311 kb on + strand, within RALBFv3_RS08550 at 1882.312 kb on - strand, within RALBFv3_RS08550 at 1882.504 kb on + strand at 1882.504 kb on + strand at 1882.504 kb on + strand at 1882.505 kb on - strand at 1882.505 kb on - strand at 1882.780 kb on + strand, within RALBFv3_RS08555 at 1882.780 kb on + strand, within RALBFv3_RS08555 at 1882.781 kb on - strand, within RALBFv3_RS08555 at 1882.910 kb on - strand, within RALBFv3_RS08555 at 1882.954 kb on + strand, within RALBFv3_RS08555 at 1882.954 kb on + strand, within RALBFv3_RS08555 at 1882.954 kb on + strand, within RALBFv3_RS08555 at 1882.955 kb on - strand, within RALBFv3_RS08555 at 1883.364 kb on + strand, within RALBFv3_RS08560 at 1883.364 kb on + strand, within RALBFv3_RS08560 at 1883.365 kb on - strand, within RALBFv3_RS08560 at 1883.428 kb on + strand at 1883.428 kb on + strand at 1883.428 kb on + strand at 1883.429 kb on - strand at 1883.429 kb on - strand at 1883.429 kb on - strand at 1883.429 kb on - strand at 1883.437 kb on + strand at 1883.438 kb on - strand at 1883.438 kb on - strand at 1883.475 kb on + strand, within RALBFv3_RS08565
Per-strain Table
Position Strand Gene LocusTag Fraction CPG with phosphorous 0.063 vol% remove 1,881,062 + RALBFv3_RS08545 0.47 +0.3 1,881,110 + RALBFv3_RS08545 0.51 +0.3 1,881,111 - RALBFv3_RS08545 0.51 +0.3 1,881,111 - RALBFv3_RS08545 0.51 +0.6 1,881,111 - RALBFv3_RS08545 0.51 +0.3 1,881,353 + RALBFv3_RS08545 0.69 -0.4 1,881,354 - RALBFv3_RS08545 0.69 +0.3 1,881,354 - RALBFv3_RS08545 0.69 +0.3 1,881,354 - RALBFv3_RS08545 0.69 -1.1 1,882,299 + RALBFv3_RS08550 0.73 +0.3 1,882,299 + RALBFv3_RS08550 0.73 +0.5 1,882,299 + RALBFv3_RS08550 0.73 -0.3 1,882,299 + +0.3 1,882,300 - RALBFv3_RS08550 0.73 +0.3 1,882,300 - RALBFv3_RS08550 0.73 +1.3 1,882,300 - RALBFv3_RS08550 0.73 +0.7 1,882,311 + RALBFv3_RS08550 0.74 +1.8 1,882,311 + RALBFv3_RS08550 0.74 +0.3 1,882,311 + RALBFv3_RS08550 0.74 +0.3 1,882,311 + RALBFv3_RS08550 0.74 +0.3 1,882,311 + RALBFv3_RS08550 0.74 +0.5 1,882,312 - RALBFv3_RS08550 0.74 +0.3 1,882,504 + +0.3 1,882,504 + +0.3 1,882,504 + +0.3 1,882,505 - +0.3 1,882,505 - +0.3 1,882,780 + RALBFv3_RS08555 0.48 +0.3 1,882,780 + RALBFv3_RS08555 0.48 +0.3 1,882,781 - RALBFv3_RS08555 0.49 -0.0 1,882,910 - RALBFv3_RS08555 0.71 +0.3 1,882,954 + RALBFv3_RS08555 0.78 -1.0 1,882,954 + RALBFv3_RS08555 0.78 -0.3 1,882,954 + RALBFv3_RS08555 0.78 +0.3 1,882,955 - RALBFv3_RS08555 0.78 -0.9 1,883,364 + RALBFv3_RS08560 0.74 -0.2 1,883,364 + RALBFv3_RS08560 0.74 +0.3 1,883,365 - RALBFv3_RS08560 0.74 +0.3 1,883,428 + +0.3 1,883,428 + -1.1 1,883,428 + -2.1 1,883,429 - +0.3 1,883,429 - +0.3 1,883,429 - +0.3 1,883,429 - +0.3 1,883,437 + -1.1 1,883,438 - +0.3 1,883,438 - +0.3 1,883,475 + RALBFv3_RS08565 0.18 +0.3
Or see this region's nucleotide sequence