Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06525

Experiment: CPG with phosphorous 0.063 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS23730 and RALBFv3_RS06520 overlap by 4 nucleotidesRALBFv3_RS06520 and RALBFv3_RS23735 are separated by 38 nucleotidesRALBFv3_RS23735 and RALBFv3_RS06525 are separated by 7 nucleotidesRALBFv3_RS06525 and RALBFv3_RS06530 are separated by 15 nucleotides RALBFv3_RS23730: RALBFv3_RS23730 - hypothetical protein, at 1,451,382 to 1,451,841 _RS23730 RALBFv3_RS06520: RALBFv3_RS06520 - hypothetical protein, at 1,451,838 to 1,452,137 _RS06520 RALBFv3_RS23735: RALBFv3_RS23735 - hypothetical protein, at 1,452,176 to 1,452,441 _RS23735 RALBFv3_RS06525: RALBFv3_RS06525 - FUSC family protein, at 1,452,449 to 1,454,662 _RS06525 RALBFv3_RS06530: RALBFv3_RS06530 - peptidase M61, at 1,454,678 to 1,456,585 _RS06530 Position (kb) 1452 1453 1454 1455Strain fitness (log2 ratio) -1 0 1at 1451.535 kb on + strand, within RALBFv3_RS23730at 1451.535 kb on + strand, within RALBFv3_RS23730at 1451.536 kb on - strand, within RALBFv3_RS23730at 1451.536 kb on - strand, within RALBFv3_RS23730at 1451.536 kb on - strand, within RALBFv3_RS23730at 1451.538 kb on + strand, within RALBFv3_RS23730at 1451.539 kb on - strand, within RALBFv3_RS23730at 1451.539 kb on - strand, within RALBFv3_RS23730at 1451.539 kb on - strand, within RALBFv3_RS23730at 1451.818 kb on + strandat 1452.276 kb on - strand, within RALBFv3_RS23735at 1452.828 kb on + strand, within RALBFv3_RS06525at 1452.828 kb on + strand, within RALBFv3_RS06525at 1452.828 kb on + strand, within RALBFv3_RS06525at 1453.084 kb on - strand, within RALBFv3_RS06525at 1453.297 kb on - strand, within RALBFv3_RS06525at 1453.419 kb on + strand, within RALBFv3_RS06525at 1453.420 kb on - strand, within RALBFv3_RS06525at 1453.770 kb on + strand, within RALBFv3_RS06525at 1453.771 kb on - strand, within RALBFv3_RS06525at 1453.938 kb on + strand, within RALBFv3_RS06525at 1454.100 kb on + strand, within RALBFv3_RS06525at 1454.101 kb on - strand, within RALBFv3_RS06525at 1454.101 kb on - strand, within RALBFv3_RS06525at 1454.125 kb on - strand, within RALBFv3_RS06525at 1454.214 kb on + strand, within RALBFv3_RS06525at 1454.214 kb on + strand, within RALBFv3_RS06525at 1454.215 kb on - strand, within RALBFv3_RS06525at 1454.245 kb on + strand, within RALBFv3_RS06525at 1454.340 kb on + strand, within RALBFv3_RS06525at 1454.340 kb on + strand, within RALBFv3_RS06525at 1454.401 kb on - strand, within RALBFv3_RS06525at 1454.423 kb on - strand, within RALBFv3_RS06525at 1454.619 kb on + strandat 1454.620 kb on - strandat 1454.629 kb on - strandat 1454.651 kb on + strandat 1454.656 kb on - strandat 1454.656 kb on - strandat 1454.656 kb on - strandat 1455.229 kb on - strand, within RALBFv3_RS06530at 1455.349 kb on - strand, within RALBFv3_RS06530at 1455.352 kb on - strand, within RALBFv3_RS06530at 1455.540 kb on + strand, within RALBFv3_RS06530at 1455.541 kb on - strand, within RALBFv3_RS06530at 1455.541 kb on - strand, within RALBFv3_RS06530

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG with phosphorous 0.063 vol%
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1,451,535 + RALBFv3_RS23730 0.33 -1.4
1,451,535 + RALBFv3_RS23730 0.33 +0.2
1,451,536 - RALBFv3_RS23730 0.33 +0.2
1,451,536 - RALBFv3_RS23730 0.33 +0.2
1,451,536 - RALBFv3_RS23730 0.33 +0.2
1,451,538 + RALBFv3_RS23730 0.34 +0.2
1,451,539 - RALBFv3_RS23730 0.34 -0.1
1,451,539 - RALBFv3_RS23730 0.34 +0.2
1,451,539 - RALBFv3_RS23730 0.34 +0.2
1,451,818 + +0.2
1,452,276 - RALBFv3_RS23735 0.38 +0.2
1,452,828 + RALBFv3_RS06525 0.17 +0.2
1,452,828 + RALBFv3_RS06525 0.17 +0.2
1,452,828 + RALBFv3_RS06525 0.17 +0.2
1,453,084 - RALBFv3_RS06525 0.29 +0.2
1,453,297 - RALBFv3_RS06525 0.38 +0.2
1,453,419 + RALBFv3_RS06525 0.44 +0.2
1,453,420 - RALBFv3_RS06525 0.44 +0.2
1,453,770 + RALBFv3_RS06525 0.60 +1.2
1,453,771 - RALBFv3_RS06525 0.60 +1.3
1,453,938 + RALBFv3_RS06525 0.67 +0.2
1,454,100 + RALBFv3_RS06525 0.75 +0.2
1,454,101 - RALBFv3_RS06525 0.75 +0.2
1,454,101 - RALBFv3_RS06525 0.75 +1.1
1,454,125 - RALBFv3_RS06525 0.76 +0.2
1,454,214 + RALBFv3_RS06525 0.80 +1.0
1,454,214 + RALBFv3_RS06525 0.80 +1.2
1,454,215 - RALBFv3_RS06525 0.80 +0.2
1,454,245 + RALBFv3_RS06525 0.81 +0.2
1,454,340 + RALBFv3_RS06525 0.85 +0.2
1,454,340 + RALBFv3_RS06525 0.85 +0.2
1,454,401 - RALBFv3_RS06525 0.88 +0.2
1,454,423 - RALBFv3_RS06525 0.89 +0.2
1,454,619 + +0.9
1,454,620 - +0.2
1,454,629 - +0.2
1,454,651 + +1.3
1,454,656 - +0.2
1,454,656 - +0.2
1,454,656 - -1.0
1,455,229 - RALBFv3_RS06530 0.29 +1.2
1,455,349 - RALBFv3_RS06530 0.35 -0.9
1,455,352 - RALBFv3_RS06530 0.35 +0.2
1,455,540 + RALBFv3_RS06530 0.45 +0.2
1,455,541 - RALBFv3_RS06530 0.45 +0.2
1,455,541 - RALBFv3_RS06530 0.45 -0.8

Or see this region's nucleotide sequence