Experiment: CPG with phosphorous 0.063 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03420 and RALBFv3_RS03425 are separated by 60 nucleotides RALBFv3_RS03425 and RALBFv3_RS03430 are separated by 18 nucleotides RALBFv3_RS03430 and RALBFv3_RS03435 overlap by 4 nucleotides RALBFv3_RS03435 and RALBFv3_RS03440 are separated by 262 nucleotides
RALBFv3_RS03420: RALBFv3_RS03420 - DUF969 domain-containing protein, at 754,149 to 754,871
_RS03420
RALBFv3_RS03425: RALBFv3_RS03425 - LamB/YcsF family protein, at 754,932 to 755,675
_RS03425
RALBFv3_RS03430: RALBFv3_RS03430 - allophanate hydrolase, at 755,694 to 756,755
_RS03430
RALBFv3_RS03435: RALBFv3_RS03435 - allophanate hydrolase, at 756,752 to 757,399
_RS03435
RALBFv3_RS03440: RALBFv3_RS03440 - Bcr/CflA family drug resistance efflux transporter, at 757,662 to 758,885
_RS03440
Position (kb) 755
756
757 Strain fitness (log2 ratio) -1
0
1
2 at 754.850 kb on + strand at 754.851 kb on + strand at 754.852 kb on - strand at 754.865 kb on + strand at 754.866 kb on - strand at 754.866 kb on - strand at 754.888 kb on - strand at 754.888 kb on - strand at 756.139 kb on + strand, within RALBFv3_RS03430 at 756.388 kb on + strand, within RALBFv3_RS03430 at 756.542 kb on + strand, within RALBFv3_RS03430 at 756.543 kb on - strand, within RALBFv3_RS03430 at 756.610 kb on + strand, within RALBFv3_RS03430 at 756.611 kb on - strand, within RALBFv3_RS03430 at 756.755 kb on + strand at 756.755 kb on + strand at 756.889 kb on - strand, within RALBFv3_RS03435 at 756.889 kb on - strand, within RALBFv3_RS03435 at 756.993 kb on + strand, within RALBFv3_RS03435 at 756.994 kb on - strand, within RALBFv3_RS03435 at 757.032 kb on + strand, within RALBFv3_RS03435 at 757.476 kb on + strand at 757.505 kb on + strand at 757.512 kb on + strand at 757.513 kb on - strand at 757.568 kb on + strand at 757.568 kb on + strand at 757.568 kb on + strand at 757.569 kb on - strand at 757.571 kb on + strand at 757.572 kb on - strand at 757.572 kb on - strand at 757.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG with phosphorous 0.063 vol% remove 754,850 + -0.3 754,851 + -1.3 754,852 - -0.0 754,865 + -0.0 754,866 - -0.0 754,866 - -0.0 754,888 - +1.3 754,888 - -0.0 756,139 + RALBFv3_RS03430 0.42 -0.6 756,388 + RALBFv3_RS03430 0.65 -1.1 756,542 + RALBFv3_RS03430 0.80 -0.1 756,543 - RALBFv3_RS03430 0.80 -0.1 756,610 + RALBFv3_RS03430 0.86 -0.9 756,611 - RALBFv3_RS03430 0.86 -0.4 756,755 + -1.6 756,755 + +0.5 756,889 - RALBFv3_RS03435 0.21 -1.1 756,889 - RALBFv3_RS03435 0.21 -0.1 756,993 + RALBFv3_RS03435 0.37 -1.6 756,994 - RALBFv3_RS03435 0.37 +2.5 757,032 + RALBFv3_RS03435 0.43 -0.1 757,476 + -0.1 757,505 + -0.1 757,512 + -0.1 757,513 - +1.4 757,568 + +1.2 757,568 + -0.1 757,568 + -0.1 757,569 - -0.1 757,571 + -0.1 757,572 - -0.1 757,572 - +0.2 757,617 + -0.1
Or see this region's nucleotide sequence