Experiment: CPG with phosphorous 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19180 and RALBFv3_RS19185 are separated by 141 nucleotides RALBFv3_RS19185 and RALBFv3_RS19190 are separated by 235 nucleotides
RALBFv3_RS19180: RALBFv3_RS19180 - rhomboid family intramembrane serine protease, at 881,245 to 881,838
_RS19180
RALBFv3_RS19185: RALBFv3_RS19185 - excinuclease ABC subunit A, at 881,980 to 887,817
_RS19185
RALBFv3_RS19190: RALBFv3_RS19190 - DNA helicase, at 888,053 to 893,554
_RS19190
Position (kb) 881
882
883
884
885
886
887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 881.047 kb on - strand at 881.074 kb on + strand at 881.215 kb on + strand at 881.215 kb on + strand at 881.216 kb on - strand at 881.494 kb on - strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.624 kb on - strand, within RALBFv3_RS19180 at 881.988 kb on + strand at 881.988 kb on + strand at 881.989 kb on - strand at 882.755 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.449 kb on - strand, within RALBFv3_RS19185 at 883.548 kb on - strand, within RALBFv3_RS19185 at 883.548 kb on - strand, within RALBFv3_RS19185 at 883.928 kb on + strand, within RALBFv3_RS19185 at 883.929 kb on - strand, within RALBFv3_RS19185 at 883.959 kb on - strand, within RALBFv3_RS19185 at 884.253 kb on - strand, within RALBFv3_RS19185 at 884.542 kb on + strand, within RALBFv3_RS19185 at 884.544 kb on - strand, within RALBFv3_RS19185 at 885.476 kb on + strand, within RALBFv3_RS19185 at 885.477 kb on - strand, within RALBFv3_RS19185 at 885.477 kb on - strand, within RALBFv3_RS19185 at 885.644 kb on + strand, within RALBFv3_RS19185 at 885.990 kb on - strand, within RALBFv3_RS19185 at 886.329 kb on - strand, within RALBFv3_RS19185 at 886.352 kb on + strand, within RALBFv3_RS19185 at 886.353 kb on - strand, within RALBFv3_RS19185 at 886.645 kb on - strand, within RALBFv3_RS19185 at 886.646 kb on + strand, within RALBFv3_RS19185 at 886.647 kb on - strand, within RALBFv3_RS19185 at 886.656 kb on - strand, within RALBFv3_RS19185 at 886.688 kb on + strand, within RALBFv3_RS19185 at 886.688 kb on + strand, within RALBFv3_RS19185 at 886.706 kb on + strand, within RALBFv3_RS19185 at 887.123 kb on + strand, within RALBFv3_RS19185 at 887.124 kb on - strand, within RALBFv3_RS19185 at 887.222 kb on - strand, within RALBFv3_RS19185 at 887.285 kb on + strand at 887.405 kb on + strand at 887.406 kb on - strand at 887.675 kb on + strand at 887.675 kb on + strand at 887.900 kb on - strand at 888.206 kb on + strand at 888.207 kb on - strand at 888.431 kb on + strand at 888.516 kb on - strand at 888.519 kb on + strand at 888.520 kb on - strand at 888.520 kb on - strand at 888.580 kb on - strand at 888.654 kb on + strand, within RALBFv3_RS19190 at 888.774 kb on + strand, within RALBFv3_RS19190
Per-strain Table
Position Strand Gene LocusTag Fraction CPG with phosphorous 0.032 vol% remove 881,047 - -0.3 881,074 + -0.6 881,215 + +0.4 881,215 + -0.3 881,216 - -0.3 881,494 - RALBFv3_RS19180 0.42 -0.3 881,506 + RALBFv3_RS19180 0.44 -0.3 881,506 + RALBFv3_RS19180 0.44 -0.3 881,506 + RALBFv3_RS19180 0.44 -0.3 881,507 - RALBFv3_RS19180 0.44 -0.3 881,507 - RALBFv3_RS19180 0.44 -0.3 881,507 - RALBFv3_RS19180 0.44 +0.2 881,507 - RALBFv3_RS19180 0.44 +0.1 881,624 - RALBFv3_RS19180 0.64 -0.3 881,988 + +0.1 881,988 + +0.4 881,989 - +2.2 882,755 + RALBFv3_RS19185 0.13 -1.1 883,448 + RALBFv3_RS19185 0.25 +0.8 883,448 + RALBFv3_RS19185 0.25 -0.4 883,448 + RALBFv3_RS19185 0.25 +3.2 883,448 + RALBFv3_RS19185 0.25 -1.9 883,449 - RALBFv3_RS19185 0.25 -0.4 883,548 - RALBFv3_RS19185 0.27 -0.4 883,548 - RALBFv3_RS19185 0.27 -0.4 883,928 + RALBFv3_RS19185 0.33 -0.4 883,929 - RALBFv3_RS19185 0.33 +1.6 883,959 - RALBFv3_RS19185 0.34 -1.2 884,253 - RALBFv3_RS19185 0.39 +1.6 884,542 + RALBFv3_RS19185 0.44 -0.4 884,544 - RALBFv3_RS19185 0.44 +0.3 885,476 + RALBFv3_RS19185 0.60 -0.4 885,477 - RALBFv3_RS19185 0.60 -0.2 885,477 - RALBFv3_RS19185 0.60 -1.9 885,644 + RALBFv3_RS19185 0.63 +0.6 885,990 - RALBFv3_RS19185 0.69 -0.2 886,329 - RALBFv3_RS19185 0.74 -0.8 886,352 + RALBFv3_RS19185 0.75 -0.4 886,353 - RALBFv3_RS19185 0.75 -1.0 886,645 - RALBFv3_RS19185 0.80 -0.4 886,646 + RALBFv3_RS19185 0.80 -0.7 886,647 - RALBFv3_RS19185 0.80 -0.4 886,656 - RALBFv3_RS19185 0.80 -0.4 886,688 + RALBFv3_RS19185 0.81 -1.4 886,688 + RALBFv3_RS19185 0.81 -0.4 886,706 + RALBFv3_RS19185 0.81 -0.2 887,123 + RALBFv3_RS19185 0.88 -0.4 887,124 - RALBFv3_RS19185 0.88 +0.6 887,222 - RALBFv3_RS19185 0.90 +1.2 887,285 + -0.4 887,405 + +0.5 887,406 - +0.0 887,675 + -0.6 887,675 + -0.4 887,900 - -0.3 888,206 + -0.3 888,207 - -0.2 888,431 + +0.8 888,516 - -0.8 888,519 + +0.0 888,520 - +0.1 888,520 - -0.3 888,580 - -0.3 888,654 + RALBFv3_RS19190 0.11 -0.3 888,774 + RALBFv3_RS19190 0.13 -0.3
Or see this region's nucleotide sequence