Experiment: CPG with phosphorous 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17625 and RALBFv3_RS17630 overlap by 4 nucleotides RALBFv3_RS17630 and RALBFv3_RS17635 overlap by 4 nucleotides RALBFv3_RS17635 and RALBFv3_RS17640 are separated by 444 nucleotides
RALBFv3_RS17625: RALBFv3_RS17625 - DUF4178 domain-containing protein, at 454,812 to 456,260
_RS17625
RALBFv3_RS17630: RALBFv3_RS17630 - hypothetical protein, at 456,257 to 456,442
_RS17630
RALBFv3_RS17635: RALBFv3_RS17635 - adenosylmethionine decarboxylase, at 456,439 to 456,861
_RS17635
RALBFv3_RS17640: RALBFv3_RS17640 - chemotaxis protein, at 457,306 to 458,028
_RS17640
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 455.731 kb on - strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.740 kb on - strand, within RALBFv3_RS17625 at 455.880 kb on + strand, within RALBFv3_RS17625 at 455.881 kb on - strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.899 kb on - strand, within RALBFv3_RS17625 at 456.102 kb on + strand, within RALBFv3_RS17625 at 456.103 kb on - strand, within RALBFv3_RS17625 at 456.309 kb on - strand, within RALBFv3_RS17630 at 456.309 kb on - strand, within RALBFv3_RS17630 at 456.354 kb on - strand, within RALBFv3_RS17630 at 456.384 kb on - strand, within RALBFv3_RS17630 at 456.714 kb on + strand, within RALBFv3_RS17635 at 457.130 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.270 kb on - strand at 457.273 kb on + strand at 457.273 kb on + strand at 457.274 kb on - strand at 457.562 kb on - strand, within RALBFv3_RS17640
Per-strain Table
Position Strand Gene LocusTag Fraction CPG with phosphorous 0.032 vol% remove 455,731 - RALBFv3_RS17625 0.63 -0.2 455,739 + RALBFv3_RS17625 0.64 +0.8 455,739 + RALBFv3_RS17625 0.64 -0.2 455,739 + RALBFv3_RS17625 0.64 +0.7 455,739 + RALBFv3_RS17625 0.64 -0.2 455,740 - RALBFv3_RS17625 0.64 -0.2 455,880 + RALBFv3_RS17625 0.74 +0.3 455,881 - RALBFv3_RS17625 0.74 -0.2 455,898 + RALBFv3_RS17625 0.75 -0.2 455,898 + RALBFv3_RS17625 0.75 -0.2 455,898 + RALBFv3_RS17625 0.75 -0.3 455,899 - RALBFv3_RS17625 0.75 +0.4 456,102 + RALBFv3_RS17625 0.89 +1.2 456,103 - RALBFv3_RS17625 0.89 -0.2 456,309 - RALBFv3_RS17630 0.28 -0.6 456,309 - RALBFv3_RS17630 0.28 +0.4 456,354 - RALBFv3_RS17630 0.52 -1.7 456,384 - RALBFv3_RS17630 0.68 -0.2 456,714 + RALBFv3_RS17635 0.65 -2.0 457,130 + -0.2 457,269 + +0.0 457,269 + -0.1 457,269 + -2.1 457,269 + -0.1 457,270 - -0.1 457,273 + -0.8 457,273 + -0.1 457,274 - -0.1 457,562 - RALBFv3_RS17640 0.35 -0.1
Or see this region's nucleotide sequence