Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15825

Experiment: CPG with phosphorous 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15820 and RALBFv3_RS15825 are separated by 442 nucleotidesRALBFv3_RS15825 and RALBFv3_RS15830 are separated by 95 nucleotides RALBFv3_RS15820: RALBFv3_RS15820 - PhoH family protein, at 3,444,550 to 3,446,268 _RS15820 RALBFv3_RS15825: RALBFv3_RS15825 - peroxiredoxin, at 3,446,711 to 3,447,175 _RS15825 RALBFv3_RS15830: RALBFv3_RS15830 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 3,447,271 to 3,448,164 _RS15830 Position (kb) 3446 3447 3448Strain fitness (log2 ratio) -1 0 1 2at 3446.557 kb on + strandat 3446.713 kb on - strandat 3446.844 kb on + strand, within RALBFv3_RS15825at 3447.009 kb on + strand, within RALBFv3_RS15825at 3447.073 kb on - strand, within RALBFv3_RS15825

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG with phosphorous 0.032 vol%
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3,446,557 + -0.1
3,446,713 - -0.1
3,446,844 + RALBFv3_RS15825 0.29 -0.1
3,447,009 + RALBFv3_RS15825 0.64 -0.1
3,447,073 - RALBFv3_RS15825 0.78 +2.3

Or see this region's nucleotide sequence