Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17345 and RS_RS17350 are separated by 1 nucleotides RS_RS17350 and RS_RS17355 overlap by 4 nucleotides RS_RS17355 and RS_RS17360 overlap by 4 nucleotides RS_RS17360 and RS_RS17365 are separated by 1 nucleotides
RS_RS17345: RS_RS17345 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 36,813 to 39,170
_RS17345
RS_RS17350: RS_RS17350 - NAD(P)-dependent oxidoreductase, at 39,172 to 39,945
_RS17350
RS_RS17355: RS_RS17355 - MarR family transcriptional regulator, at 39,942 to 40,547
_RS17355
RS_RS17360: RS_RS17360 - enoyl-CoA hydratase, at 40,544 to 41,395
_RS17360
RS_RS17365: RS_RS17365 - acyl-CoA dehydrogenase, at 41,397 to 42,596
_RS17365
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 39.031 kb on - strand at 39.619 kb on + strand, within RS_RS17350 at 39.619 kb on + strand, within RS_RS17350 at 39.619 kb on + strand, within RS_RS17350 at 39.619 kb on + strand, within RS_RS17350 at 39.620 kb on - strand, within RS_RS17350 at 39.620 kb on - strand, within RS_RS17350 at 40.145 kb on + strand, within RS_RS17355 at 40.145 kb on + strand, within RS_RS17355 at 40.168 kb on - strand, within RS_RS17355 at 40.168 kb on - strand, within RS_RS17355 at 40.224 kb on + strand, within RS_RS17355 at 40.440 kb on + strand, within RS_RS17355 at 40.441 kb on - strand, within RS_RS17355 at 40.697 kb on + strand, within RS_RS17360 at 41.099 kb on + strand, within RS_RS17360 at 41.100 kb on - strand, within RS_RS17360 at 41.349 kb on - strand at 41.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 39,031 - +0.6 39,619 + RS_RS17350 0.58 +1.0 39,619 + RS_RS17350 0.58 -1.6 39,619 + RS_RS17350 0.58 -1.1 39,619 + RS_RS17350 0.58 -0.3 39,620 - RS_RS17350 0.58 -1.2 39,620 - RS_RS17350 0.58 -0.8 40,145 + RS_RS17355 0.33 +0.7 40,145 + RS_RS17355 0.33 -0.1 40,168 - RS_RS17355 0.37 +0.1 40,168 - RS_RS17355 0.37 +2.1 40,224 + RS_RS17355 0.47 -1.1 40,440 + RS_RS17355 0.82 +1.1 40,441 - RS_RS17355 0.82 +2.1 40,697 + RS_RS17360 0.18 -0.0 41,099 + RS_RS17360 0.65 +0.3 41,100 - RS_RS17360 0.65 -1.1 41,349 - -0.4 41,412 + -1.4
Or see this region's nucleotide sequence