Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS25840 and RS_RS17300 are separated by 678 nucleotides RS_RS17300 and RS_RS17305 are separated by 283 nucleotides
RS_RS25840: RS_RS25840 - hypothetical protein, at 25,942 to 26,130
_RS25840
RS_RS17300: RS_RS17300 - hypothetical protein, at 26,809 to 27,570
_RS17300
RS_RS17305: RS_RS17305 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 27,854 to 28,333
_RS17305
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.170 kb on + strand at 26.170 kb on + strand at 26.171 kb on - strand at 26.643 kb on + strand at 26.644 kb on - strand at 26.720 kb on + strand at 26.720 kb on + strand at 26.720 kb on + strand at 26.720 kb on + strand at 26.721 kb on - strand at 26.754 kb on + strand at 26.754 kb on + strand at 26.754 kb on + strand at 26.755 kb on - strand at 26.779 kb on + strand at 26.779 kb on + strand at 26.780 kb on - strand at 26.823 kb on + strand at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.893 kb on + strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.894 kb on - strand, within RS_RS17300 at 26.899 kb on + strand, within RS_RS17300 at 26.899 kb on + strand, within RS_RS17300 at 26.900 kb on - strand, within RS_RS17300 at 27.016 kb on + strand, within RS_RS17300 at 27.016 kb on + strand, within RS_RS17300 at 27.016 kb on + strand, within RS_RS17300 at 27.017 kb on - strand, within RS_RS17300 at 27.017 kb on - strand, within RS_RS17300 at 27.017 kb on - strand, within RS_RS17300 at 27.068 kb on - strand, within RS_RS17300 at 27.068 kb on - strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.071 kb on + strand, within RS_RS17300 at 27.072 kb on - strand, within RS_RS17300 at 27.072 kb on - strand, within RS_RS17300 at 27.072 kb on - strand, within RS_RS17300 at 27.072 kb on - strand, within RS_RS17300 at 27.127 kb on + strand, within RS_RS17300 at 27.127 kb on + strand, within RS_RS17300 at 27.127 kb on + strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.128 kb on - strand, within RS_RS17300 at 27.186 kb on + strand, within RS_RS17300 at 27.187 kb on - strand, within RS_RS17300 at 27.187 kb on - strand, within RS_RS17300 at 27.195 kb on + strand, within RS_RS17300 at 27.195 kb on + strand, within RS_RS17300 at 27.195 kb on + strand, within RS_RS17300 at 27.196 kb on - strand, within RS_RS17300 at 27.196 kb on - strand, within RS_RS17300 at 27.205 kb on + strand, within RS_RS17300 at 27.206 kb on - strand, within RS_RS17300 at 27.206 kb on - strand, within RS_RS17300 at 27.206 kb on - strand, within RS_RS17300 at 27.223 kb on + strand, within RS_RS17300 at 27.223 kb on + strand, within RS_RS17300 at 27.224 kb on - strand, within RS_RS17300 at 27.247 kb on + strand, within RS_RS17300 at 27.289 kb on + strand, within RS_RS17300 at 27.289 kb on + strand, within RS_RS17300 at 27.289 kb on + strand, within RS_RS17300 at 27.289 kb on + strand, within RS_RS17300 at 27.290 kb on - strand, within RS_RS17300 at 27.355 kb on + strand, within RS_RS17300 at 27.355 kb on + strand, within RS_RS17300 at 27.355 kb on + strand, within RS_RS17300 at 27.356 kb on - strand, within RS_RS17300 at 27.405 kb on + strand, within RS_RS17300 at 27.406 kb on - strand, within RS_RS17300 at 27.412 kb on + strand, within RS_RS17300 at 27.412 kb on + strand, within RS_RS17300 at 27.413 kb on - strand, within RS_RS17300 at 27.484 kb on + strand, within RS_RS17300 at 27.484 kb on + strand, within RS_RS17300 at 27.484 kb on + strand, within RS_RS17300 at 27.484 kb on + strand, within RS_RS17300 at 27.485 kb on - strand, within RS_RS17300 at 27.485 kb on - strand, within RS_RS17300 at 27.485 kb on - strand, within RS_RS17300 at 27.485 kb on - strand, within RS_RS17300 at 27.485 kb on - strand, within RS_RS17300 at 27.514 kb on + strand at 27.521 kb on + strand at 27.532 kb on + strand at 27.533 kb on - strand at 27.631 kb on - strand at 27.708 kb on + strand at 27.709 kb on - strand at 27.709 kb on - strand at 27.795 kb on + strand at 27.874 kb on - strand at 27.978 kb on + strand, within RS_RS17305 at 27.978 kb on + strand, within RS_RS17305 at 27.993 kb on + strand, within RS_RS17305 at 28.029 kb on + strand, within RS_RS17305 at 28.131 kb on + strand, within RS_RS17305 at 28.132 kb on - strand, within RS_RS17305 at 28.132 kb on - strand, within RS_RS17305 at 28.255 kb on + strand, within RS_RS17305 at 28.255 kb on + strand at 28.369 kb on - strand at 28.369 kb on - strand at 28.484 kb on + strand at 28.484 kb on + strand at 28.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 26,170 + -0.3 26,170 + +0.9 26,171 - +2.5 26,643 + -0.4 26,644 - -1.0 26,720 + -2.1 26,720 + +0.4 26,720 + +1.3 26,720 + +0.0 26,721 - +0.5 26,754 + -2.1 26,754 + +0.0 26,754 + -0.2 26,755 - -0.9 26,779 + -1.3 26,779 + +2.1 26,780 - +1.5 26,823 + -0.6 26,893 + RS_RS17300 0.11 -0.1 26,893 + RS_RS17300 0.11 +0.9 26,893 + RS_RS17300 0.11 -0.2 26,893 + RS_RS17300 0.11 -1.7 26,893 + RS_RS17300 0.11 -1.9 26,893 + RS_RS17300 0.11 -1.0 26,893 + RS_RS17300 0.11 -0.1 26,893 + RS_RS17300 0.11 -0.7 26,893 + RS_RS17300 0.11 -0.1 26,894 - RS_RS17300 0.11 +0.1 26,894 - RS_RS17300 0.11 +2.1 26,894 - RS_RS17300 0.11 +1.5 26,894 - RS_RS17300 0.11 -1.1 26,894 - RS_RS17300 0.11 -0.4 26,894 - RS_RS17300 0.11 -0.1 26,894 - RS_RS17300 0.11 +2.1 26,894 - RS_RS17300 0.11 +0.1 26,894 - RS_RS17300 0.11 +1.1 26,894 - RS_RS17300 0.11 +0.1 26,894 - RS_RS17300 0.11 +1.1 26,894 - RS_RS17300 0.11 -0.9 26,894 - RS_RS17300 0.11 -1.6 26,899 + RS_RS17300 0.12 +0.2 26,899 + RS_RS17300 0.12 +2.1 26,900 - RS_RS17300 0.12 +0.6 27,016 + RS_RS17300 0.27 -0.5 27,016 + RS_RS17300 0.27 -0.5 27,016 + RS_RS17300 0.27 +0.5 27,017 - RS_RS17300 0.27 +0.3 27,017 - RS_RS17300 0.27 +0.5 27,017 - RS_RS17300 0.27 +0.3 27,068 - RS_RS17300 0.34 +0.4 27,068 - RS_RS17300 0.34 -0.1 27,071 + RS_RS17300 0.34 -0.1 27,071 + RS_RS17300 0.34 -1.6 27,071 + RS_RS17300 0.34 +0.1 27,071 + RS_RS17300 0.34 +0.8 27,071 + RS_RS17300 0.34 -1.3 27,071 + RS_RS17300 0.34 +1.5 27,071 + RS_RS17300 0.34 -0.3 27,071 + RS_RS17300 0.34 +0.9 27,072 - RS_RS17300 0.35 +1.0 27,072 - RS_RS17300 0.35 -0.4 27,072 - RS_RS17300 0.35 +2.5 27,072 - RS_RS17300 0.35 -1.1 27,127 + RS_RS17300 0.42 -0.0 27,127 + RS_RS17300 0.42 -0.7 27,127 + RS_RS17300 0.42 -0.5 27,128 - RS_RS17300 0.42 +0.3 27,128 - RS_RS17300 0.42 -0.9 27,128 - RS_RS17300 0.42 +0.1 27,128 - RS_RS17300 0.42 +0.2 27,128 - RS_RS17300 0.42 +0.3 27,128 - RS_RS17300 0.42 +0.1 27,186 + RS_RS17300 0.49 -0.3 27,187 - RS_RS17300 0.50 +2.5 27,187 - RS_RS17300 0.50 -0.4 27,195 + RS_RS17300 0.51 -0.4 27,195 + RS_RS17300 0.51 +0.2 27,195 + RS_RS17300 0.51 +0.8 27,196 - RS_RS17300 0.51 +0.1 27,196 - RS_RS17300 0.51 +1.4 27,205 + RS_RS17300 0.52 -1.2 27,206 - RS_RS17300 0.52 -1.5 27,206 - RS_RS17300 0.52 +0.0 27,206 - RS_RS17300 0.52 -0.3 27,223 + RS_RS17300 0.54 -0.2 27,223 + RS_RS17300 0.54 -0.1 27,224 - RS_RS17300 0.54 +0.5 27,247 + RS_RS17300 0.57 -0.7 27,289 + RS_RS17300 0.63 -0.4 27,289 + RS_RS17300 0.63 -0.7 27,289 + RS_RS17300 0.63 +1.4 27,289 + RS_RS17300 0.63 +0.5 27,290 - RS_RS17300 0.63 +0.5 27,355 + RS_RS17300 0.72 -0.1 27,355 + RS_RS17300 0.72 -0.3 27,355 + RS_RS17300 0.72 +1.5 27,356 - RS_RS17300 0.72 +2.1 27,405 + RS_RS17300 0.78 -0.2 27,406 - RS_RS17300 0.78 +0.5 27,412 + RS_RS17300 0.79 -0.2 27,412 + RS_RS17300 0.79 -0.1 27,413 - RS_RS17300 0.79 -1.0 27,484 + RS_RS17300 0.89 +1.1 27,484 + RS_RS17300 0.89 +1.5 27,484 + RS_RS17300 0.89 -0.2 27,484 + RS_RS17300 0.89 -1.2 27,485 - RS_RS17300 0.89 +1.1 27,485 - RS_RS17300 0.89 +0.1 27,485 - RS_RS17300 0.89 +1.1 27,485 - RS_RS17300 0.89 +0.3 27,485 - RS_RS17300 0.89 -0.5 27,514 + +0.0 27,521 + +0.3 27,532 + -1.2 27,533 - -0.2 27,631 - +0.8 27,708 + -0.6 27,709 - -0.5 27,709 - +0.5 27,795 + +0.5 27,874 - +0.2 27,978 + RS_RS17305 0.26 -0.3 27,978 + RS_RS17305 0.26 +0.6 27,993 + RS_RS17305 0.29 +1.1 28,029 + RS_RS17305 0.36 +3.0 28,131 + RS_RS17305 0.58 -0.0 28,132 - RS_RS17305 0.58 -1.2 28,132 - RS_RS17305 0.58 +0.4 28,255 + RS_RS17305 0.84 +0.5 28,255 + +2.1 28,369 - -1.0 28,369 - -0.2 28,484 + -0.1 28,484 + -0.1 28,485 - -0.2
Or see this region's nucleotide sequence