Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16690

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16680 and RS_RS16685 are separated by 131 nucleotidesRS_RS16685 and RS_RS16690 are separated by 59 nucleotidesRS_RS16690 and RS_RS16695 are separated by 107 nucleotides RS_RS16680: RS_RS16680 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,592,071 to 3,593,219 _RS16680 RS_RS16685: RS_RS16685 - hypothetical protein, at 3,593,351 to 3,593,899 _RS16685 RS_RS16690: RS_RS16690 - short chain dehydrogenase, at 3,593,959 to 3,594,564 _RS16690 RS_RS16695: RS_RS16695 - LysR family transcriptional regulator, at 3,594,672 to 3,595,568 _RS16695 Position (kb) 3593 3594 3595Strain fitness (log2 ratio) -2 -1 0 1 2at 3593.035 kb on + strand, within RS_RS16680at 3593.035 kb on + strand, within RS_RS16680at 3593.035 kb on + strand, within RS_RS16680at 3593.035 kb on + strand, within RS_RS16680at 3593.036 kb on - strand, within RS_RS16680at 3593.036 kb on - strand, within RS_RS16680at 3593.036 kb on - strand, within RS_RS16680at 3593.297 kb on + strandat 3593.297 kb on + strandat 3593.421 kb on + strand, within RS_RS16685at 3593.422 kb on - strand, within RS_RS16685at 3593.424 kb on + strand, within RS_RS16685at 3593.424 kb on + strand, within RS_RS16685at 3593.424 kb on + strand, within RS_RS16685at 3593.425 kb on - strand, within RS_RS16685at 3593.425 kb on - strand, within RS_RS16685at 3593.700 kb on + strand, within RS_RS16685at 3593.712 kb on + strand, within RS_RS16685at 3593.713 kb on - strand, within RS_RS16685at 3594.638 kb on + strandat 3594.654 kb on + strandat 3594.777 kb on + strand, within RS_RS16695at 3594.778 kb on - strand, within RS_RS16695at 3594.867 kb on + strand, within RS_RS16695at 3594.867 kb on + strand, within RS_RS16695at 3594.867 kb on + strand, within RS_RS16695at 3594.867 kb on + strand, within RS_RS16695at 3594.867 kb on + strand, within RS_RS16695at 3594.868 kb on - strand, within RS_RS16695at 3594.868 kb on - strand, within RS_RS16695at 3594.898 kb on + strand, within RS_RS16695at 3594.899 kb on - strand, within RS_RS16695at 3594.899 kb on - strand, within RS_RS16695at 3594.899 kb on - strand, within RS_RS16695at 3594.899 kb on - strand, within RS_RS16695at 3595.182 kb on + strand, within RS_RS16695at 3595.183 kb on - strand, within RS_RS16695at 3595.449 kb on + strand, within RS_RS16695at 3595.449 kb on + strand, within RS_RS16695at 3595.450 kb on - strand, within RS_RS16695at 3595.450 kb on - strand, within RS_RS16695

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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3,593,035 + RS_RS16680 0.84 +2.4
3,593,035 + RS_RS16680 0.84 +2.4
3,593,035 + RS_RS16680 0.84 -1.3
3,593,035 + RS_RS16680 0.84 +0.1
3,593,036 - RS_RS16680 0.84 -1.3
3,593,036 - RS_RS16680 0.84 -0.1
3,593,036 - RS_RS16680 0.84 -1.5
3,593,297 + -0.0
3,593,297 + +0.7
3,593,421 + RS_RS16685 0.13 -1.6
3,593,422 - RS_RS16685 0.13 +0.0
3,593,424 + RS_RS16685 0.13 -1.8
3,593,424 + RS_RS16685 0.13 +2.2
3,593,424 + RS_RS16685 0.13 +2.4
3,593,425 - RS_RS16685 0.13 -0.7
3,593,425 - RS_RS16685 0.13 -1.9
3,593,700 + RS_RS16685 0.64 -0.1
3,593,712 + RS_RS16685 0.66 -0.8
3,593,713 - RS_RS16685 0.66 -0.3
3,594,638 + -0.3
3,594,654 + -0.2
3,594,777 + RS_RS16695 0.12 +0.8
3,594,778 - RS_RS16695 0.12 +0.7
3,594,867 + RS_RS16695 0.22 -1.2
3,594,867 + RS_RS16695 0.22 +2.4
3,594,867 + RS_RS16695 0.22 +0.5
3,594,867 + RS_RS16695 0.22 +1.1
3,594,867 + RS_RS16695 0.22 -0.9
3,594,868 - RS_RS16695 0.22 -1.0
3,594,868 - RS_RS16695 0.22 -0.7
3,594,898 + RS_RS16695 0.25 +0.3
3,594,899 - RS_RS16695 0.25 +0.0
3,594,899 - RS_RS16695 0.25 -2.5
3,594,899 - RS_RS16695 0.25 -0.8
3,594,899 - RS_RS16695 0.25 -0.0
3,595,182 + RS_RS16695 0.57 +0.0
3,595,183 - RS_RS16695 0.57 +2.4
3,595,449 + RS_RS16695 0.87 -0.7
3,595,449 + RS_RS16695 0.87 -0.7
3,595,450 - RS_RS16695 0.87 -0.3
3,595,450 - RS_RS16695 0.87 +0.4

Or see this region's nucleotide sequence