Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08270

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS08260 and RS_RS08265 are separated by 27 nucleotidesRS_RS08265 and RS_RS08270 are separated by 111 nucleotidesRS_RS08270 and RS_RS08275 are separated by 34 nucleotides RS_RS08260: RS_RS08260 - cystathionine beta-lyase, at 1,760,865 to 1,762,079 _RS08260 RS_RS08265: RS_RS08265 - phosphoserine phosphatase SerB, at 1,762,107 to 1,762,964 _RS08265 RS_RS08270: RS_RS08270 - acetylornithine deacetylase, at 1,763,076 to 1,764,269 _RS08270 RS_RS08275: RS_RS08275 - transcription-repair coupling factor, at 1,764,304 to 1,767,735 _RS08275 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1762.108 kb on + strandat 1762.109 kb on - strandat 1762.109 kb on - strandat 1762.777 kb on + strand, within RS_RS08265at 1762.778 kb on - strand, within RS_RS08265at 1762.778 kb on - strand, within RS_RS08265at 1762.882 kb on + strandat 1762.882 kb on + strandat 1762.882 kb on + strandat 1762.882 kb on + strandat 1762.882 kb on + strandat 1762.882 kb on + strandat 1762.883 kb on - strandat 1762.883 kb on - strandat 1763.008 kb on + strandat 1763.009 kb on - strandat 1763.013 kb on + strandat 1763.161 kb on + strandat 1763.206 kb on - strand, within RS_RS08270at 1763.206 kb on - strand, within RS_RS08270at 1763.254 kb on + strand, within RS_RS08270at 1763.420 kb on - strand, within RS_RS08270at 1763.420 kb on - strand, within RS_RS08270at 1763.508 kb on - strand, within RS_RS08270at 1763.508 kb on - strand, within RS_RS08270at 1763.508 kb on - strand, within RS_RS08270at 1763.508 kb on - strand, within RS_RS08270at 1763.642 kb on - strand, within RS_RS08270at 1763.642 kb on - strand, within RS_RS08270at 1763.642 kb on - strand, within RS_RS08270at 1763.642 kb on - strand, within RS_RS08270at 1763.642 kb on - strand, within RS_RS08270at 1763.647 kb on - strand, within RS_RS08270at 1763.647 kb on - strand, within RS_RS08270at 1763.848 kb on + strand, within RS_RS08270at 1763.849 kb on - strand, within RS_RS08270at 1763.849 kb on - strand, within RS_RS08270at 1764.121 kb on + strand, within RS_RS08270at 1764.809 kb on + strand, within RS_RS08275at 1764.809 kb on + strand, within RS_RS08275at 1764.809 kb on + strand, within RS_RS08275at 1764.809 kb on + strand, within RS_RS08275at 1764.903 kb on - strand, within RS_RS08275at 1764.995 kb on + strand, within RS_RS08275at 1764.996 kb on - strand, within RS_RS08275at 1765.001 kb on + strand, within RS_RS08275

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,762,108 + +0.2
1,762,109 - -0.2
1,762,109 - +0.4
1,762,777 + RS_RS08265 0.78 -4.9
1,762,778 - RS_RS08265 0.78 -2.1
1,762,778 - RS_RS08265 0.78 -3.8
1,762,882 + -4.8
1,762,882 + -3.6
1,762,882 + -5.7
1,762,882 + -3.3
1,762,882 + -5.0
1,762,882 + -2.7
1,762,883 - -2.1
1,762,883 - -3.6
1,763,008 + -5.1
1,763,009 - -0.3
1,763,013 + -0.0
1,763,161 + -0.1
1,763,206 - RS_RS08270 0.11 -0.3
1,763,206 - RS_RS08270 0.11 -0.1
1,763,254 + RS_RS08270 0.15 -0.4
1,763,420 - RS_RS08270 0.29 +0.3
1,763,420 - RS_RS08270 0.29 -2.6
1,763,508 - RS_RS08270 0.36 -1.0
1,763,508 - RS_RS08270 0.36 -0.1
1,763,508 - RS_RS08270 0.36 -2.3
1,763,508 - RS_RS08270 0.36 -0.6
1,763,642 - RS_RS08270 0.47 +0.5
1,763,642 - RS_RS08270 0.47 +0.0
1,763,642 - RS_RS08270 0.47 +1.1
1,763,642 - RS_RS08270 0.47 +1.1
1,763,642 - RS_RS08270 0.47 +0.2
1,763,647 - RS_RS08270 0.48 -0.1
1,763,647 - RS_RS08270 0.48 +0.0
1,763,848 + RS_RS08270 0.65 +0.7
1,763,849 - RS_RS08270 0.65 +0.6
1,763,849 - RS_RS08270 0.65 -0.5
1,764,121 + RS_RS08270 0.88 -2.4
1,764,809 + RS_RS08275 0.15 +0.9
1,764,809 + RS_RS08275 0.15 -0.8
1,764,809 + RS_RS08275 0.15 -2.2
1,764,809 + RS_RS08275 0.15 +0.3
1,764,903 - RS_RS08275 0.17 -0.5
1,764,995 + RS_RS08275 0.20 -0.5
1,764,996 - RS_RS08275 0.20 +0.8
1,765,001 + RS_RS08275 0.20 -1.6

Or see this region's nucleotide sequence