Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04565 and RS_RS04570 are separated by 117 nucleotides RS_RS04570 and RS_RS04575 are separated by 156 nucleotides
RS_RS04565: RS_RS04565 - lytic murein transglycosylase B, at 969,474 to 970,586
_RS04565
RS_RS04570: RS_RS04570 - deacetylase, at 970,704 to 971,627
_RS04570
RS_RS04575: RS_RS04575 - methionine import ATP-binding protein MetN, at 971,784 to 972,836
_RS04575
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 969.949 kb on + strand, within RS_RS04565 at 970.123 kb on + strand, within RS_RS04565 at 970.334 kb on - strand, within RS_RS04565 at 970.617 kb on + strand at 970.618 kb on - strand at 970.661 kb on + strand at 970.661 kb on + strand at 970.720 kb on - strand at 970.893 kb on + strand, within RS_RS04570 at 970.893 kb on + strand, within RS_RS04570 at 970.974 kb on + strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 971.334 kb on + strand, within RS_RS04570 at 971.566 kb on - strand at 971.623 kb on + strand at 971.623 kb on + strand at 971.624 kb on - strand at 971.624 kb on - strand at 971.624 kb on - strand at 971.693 kb on + strand at 971.693 kb on + strand at 971.693 kb on + strand at 971.694 kb on - strand at 971.694 kb on - strand at 971.694 kb on - strand at 971.706 kb on - strand at 971.710 kb on + strand at 971.729 kb on + strand at 971.774 kb on + strand at 971.774 kb on + strand at 971.775 kb on - strand at 971.778 kb on + strand at 971.778 kb on + strand at 971.779 kb on - strand at 971.779 kb on - strand at 972.084 kb on + strand, within RS_RS04575 at 972.084 kb on + strand, within RS_RS04575 at 972.085 kb on - strand, within RS_RS04575
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 969,949 + RS_RS04565 0.43 -1.3 970,123 + RS_RS04565 0.58 -0.6 970,334 - RS_RS04565 0.77 +0.3 970,617 + +1.0 970,618 - +0.6 970,661 + -1.4 970,661 + +0.4 970,720 - +4.3 970,893 + RS_RS04570 0.20 -1.7 970,893 + RS_RS04570 0.20 +0.4 970,974 + RS_RS04570 0.29 -1.1 970,975 - RS_RS04570 0.29 -1.2 970,975 - RS_RS04570 0.29 -2.8 970,975 - RS_RS04570 0.29 -0.3 971,334 + RS_RS04570 0.68 -0.3 971,566 - -0.8 971,623 + -0.3 971,623 + +0.5 971,624 - +0.4 971,624 - +0.6 971,624 - +2.0 971,693 + -0.4 971,693 + +0.2 971,693 + +2.4 971,694 - -1.4 971,694 - -2.1 971,694 - +0.8 971,706 - +0.4 971,710 + -0.5 971,729 + -0.3 971,774 + -0.5 971,774 + -1.3 971,775 - -0.9 971,778 + -1.1 971,778 + +0.9 971,779 - -1.9 971,779 - -1.0 972,084 + RS_RS04575 0.28 -0.2 972,084 + RS_RS04575 0.28 -0.3 972,085 - RS_RS04575 0.29 -1.0
Or see this region's nucleotide sequence