Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00790 and RS_RS00795 overlap by 4 nucleotides RS_RS00795 and RS_RS00800 are separated by 110 nucleotides RS_RS00800 and RS_RS00805 are separated by 13 nucleotides
RS_RS00790: RS_RS00790 - LysR family transcriptional regulator, at 180,020 to 180,946
_RS00790
RS_RS00795: RS_RS00795 - aldehyde dehydrogenase family protein, at 180,943 to 182,454
_RS00795
RS_RS00800: RS_RS00800 - TetR/AcrR family transcriptional regulator, at 182,565 to 183,317
_RS00800
RS_RS00805: RS_RS00805 - secretion protein HlyD, at 183,331 to 184,302
_RS00805
Position (kb) 180
181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.042 kb on - strand at 180.050 kb on - strand at 180.128 kb on + strand, within RS_RS00790 at 180.298 kb on - strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.620 kb on + strand, within RS_RS00790 at 180.621 kb on - strand, within RS_RS00790 at 180.641 kb on + strand, within RS_RS00790 at 180.641 kb on + strand, within RS_RS00790 at 180.642 kb on - strand, within RS_RS00790 at 180.944 kb on + strand at 180.944 kb on + strand at 180.945 kb on - strand at 180.996 kb on - strand at 180.996 kb on - strand at 181.025 kb on + strand at 181.025 kb on + strand at 181.025 kb on + strand at 181.026 kb on - strand at 181.271 kb on + strand, within RS_RS00795 at 181.271 kb on + strand, within RS_RS00795 at 181.271 kb on + strand, within RS_RS00795 at 181.271 kb on + strand, within RS_RS00795 at 181.272 kb on - strand, within RS_RS00795 at 181.272 kb on - strand, within RS_RS00795 at 181.272 kb on - strand, within RS_RS00795 at 181.272 kb on - strand, within RS_RS00795 at 181.346 kb on + strand, within RS_RS00795 at 181.346 kb on + strand, within RS_RS00795 at 181.347 kb on - strand, within RS_RS00795 at 181.347 kb on - strand, within RS_RS00795 at 181.347 kb on - strand, within RS_RS00795 at 181.350 kb on - strand, within RS_RS00795 at 181.350 kb on - strand, within RS_RS00795 at 181.350 kb on - strand, within RS_RS00795 at 181.446 kb on - strand, within RS_RS00795 at 181.550 kb on + strand, within RS_RS00795 at 182.087 kb on + strand, within RS_RS00795 at 182.087 kb on + strand, within RS_RS00795 at 182.087 kb on + strand, within RS_RS00795 at 182.088 kb on - strand, within RS_RS00795 at 182.272 kb on - strand, within RS_RS00795 at 182.742 kb on + strand, within RS_RS00800 at 183.309 kb on - strand at 183.427 kb on + strand at 183.428 kb on - strand at 183.428 kb on - strand at 183.437 kb on - strand, within RS_RS00805
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 180,042 - -0.9 180,050 - +2.3 180,128 + RS_RS00790 0.12 -1.2 180,298 - RS_RS00790 0.30 +1.3 180,521 + RS_RS00790 0.54 -0.8 180,521 + RS_RS00790 0.54 +0.2 180,521 + RS_RS00790 0.54 +2.3 180,620 + RS_RS00790 0.65 -0.1 180,621 - RS_RS00790 0.65 -0.5 180,641 + RS_RS00790 0.67 -0.4 180,641 + RS_RS00790 0.67 +2.3 180,642 - RS_RS00790 0.67 -0.6 180,944 + -2.7 180,944 + -0.6 180,945 - +1.3 180,996 - +0.5 180,996 - -2.3 181,025 + +1.0 181,025 + -0.3 181,025 + +0.6 181,026 - +1.8 181,271 + RS_RS00795 0.22 +1.3 181,271 + RS_RS00795 0.22 -0.2 181,271 + RS_RS00795 0.22 +0.2 181,271 + RS_RS00795 0.22 -0.1 181,272 - RS_RS00795 0.22 +1.2 181,272 - RS_RS00795 0.22 -0.4 181,272 - RS_RS00795 0.22 +2.3 181,272 - RS_RS00795 0.22 -0.3 181,346 + RS_RS00795 0.27 -1.1 181,346 + RS_RS00795 0.27 +0.2 181,347 - RS_RS00795 0.27 +2.3 181,347 - RS_RS00795 0.27 +0.1 181,347 - RS_RS00795 0.27 -0.2 181,350 - RS_RS00795 0.27 +0.7 181,350 - RS_RS00795 0.27 -0.2 181,350 - RS_RS00795 0.27 -1.3 181,446 - RS_RS00795 0.33 -0.2 181,550 + RS_RS00795 0.40 +1.3 182,087 + RS_RS00795 0.76 +0.7 182,087 + RS_RS00795 0.76 +2.3 182,087 + RS_RS00795 0.76 +2.3 182,088 - RS_RS00795 0.76 +0.2 182,272 - RS_RS00795 0.88 +0.2 182,742 + RS_RS00800 0.24 -1.4 183,309 - -0.4 183,427 + -0.4 183,428 - +0.8 183,428 - -0.4 183,437 - RS_RS00805 0.11 +1.7
Or see this region's nucleotide sequence