Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00650

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00645 and RS_RS00650 are separated by 20 nucleotidesRS_RS00650 and RS_RS00655 are separated by 309 nucleotidesRS_RS00655 and RS_RS00660 are separated by 72 nucleotides RS_RS00645: RS_RS00645 - phosphatase PAP2 family protein, at 152,819 to 154,792 _RS00645 RS_RS00650: RS_RS00650 - AraC family transcriptional regulator, at 154,813 to 155,694 _RS00650 RS_RS00655: RS_RS00655 - GYD domain-containing protein, at 156,004 to 156,297 _RS00655 RS_RS00660: RS_RS00660 - S-adenosylmethionine synthase, at 156,370 to 157,560 _RS00660 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 153.861 kb on - strand, within RS_RS00645at 153.896 kb on + strand, within RS_RS00645at 153.896 kb on + strand, within RS_RS00645at 154.244 kb on + strand, within RS_RS00645at 154.244 kb on + strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.754 kb on + strandat 154.755 kb on - strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.832 kb on - strandat 154.832 kb on - strandat 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.941 kb on - strand, within RS_RS00650at 154.947 kb on - strand, within RS_RS00650at 154.947 kb on - strand, within RS_RS00650at 155.000 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.673 kb on - strandat 155.970 kb on + strandat 156.148 kb on + strand, within RS_RS00655at 156.148 kb on + strand, within RS_RS00655at 156.148 kb on + strand, within RS_RS00655at 156.319 kb on + strandat 156.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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153,861 - RS_RS00645 0.53 -0.0
153,896 + RS_RS00645 0.55 +0.1
153,896 + RS_RS00645 0.55 -0.4
154,244 + RS_RS00645 0.72 +0.8
154,244 + RS_RS00645 0.72 -0.4
154,470 - RS_RS00645 0.84 -0.1
154,470 - RS_RS00645 0.84 -0.8
154,470 - RS_RS00645 0.84 -1.3
154,754 + -0.0
154,755 - +0.3
154,831 + -0.2
154,831 + -0.7
154,831 + +3.3
154,831 + -0.4
154,832 - -0.2
154,832 - -0.6
154,940 + RS_RS00650 0.14 -0.0
154,940 + RS_RS00650 0.14 +1.5
154,940 + RS_RS00650 0.14 +0.2
154,940 + RS_RS00650 0.14 -0.1
154,941 - RS_RS00650 0.15 +0.7
154,947 - RS_RS00650 0.15 -1.4
154,947 - RS_RS00650 0.15 +0.7
155,000 + RS_RS00650 0.21 -0.4
155,132 + RS_RS00650 0.36 -1.2
155,132 + RS_RS00650 0.36 +0.5
155,132 + RS_RS00650 0.36 +0.4
155,132 + RS_RS00650 0.36 -1.0
155,132 + RS_RS00650 0.36 +1.4
155,133 - RS_RS00650 0.36 -1.5
155,133 - RS_RS00650 0.36 +1.3
155,133 - RS_RS00650 0.36 +1.6
155,133 - RS_RS00650 0.36 +1.2
155,329 + RS_RS00650 0.59 -0.7
155,329 + RS_RS00650 0.59 -0.3
155,329 + RS_RS00650 0.59 +0.1
155,330 - RS_RS00650 0.59 +0.8
155,330 - RS_RS00650 0.59 -0.3
155,330 - RS_RS00650 0.59 +0.9
155,522 + RS_RS00650 0.80 -2.0
155,522 + RS_RS00650 0.80 -0.2
155,522 + RS_RS00650 0.80 -0.7
155,522 + RS_RS00650 0.80 -0.0
155,522 + RS_RS00650 0.80 +0.1
155,522 + RS_RS00650 0.80 -0.6
155,523 - RS_RS00650 0.80 +0.5
155,523 - RS_RS00650 0.80 +0.7
155,523 - RS_RS00650 0.80 -0.2
155,523 - RS_RS00650 0.80 +0.0
155,523 - RS_RS00650 0.80 +0.4
155,673 - -0.7
155,970 + +2.3
156,148 + RS_RS00655 0.49 +2.3
156,148 + RS_RS00655 0.49 -0.6
156,148 + RS_RS00655 0.49 +1.2
156,319 + -0.2
156,319 + -0.7

Or see this region's nucleotide sequence