Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00220

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00210 and RS_RS00215 are separated by 34 nucleotidesRS_RS00215 and RS_RS00220 are separated by 145 nucleotidesRS_RS00220 and RS_RS00225 are separated by 100 nucleotides RS_RS00210: RS_RS00210 - HslU--HslV peptidase ATPase subunit, at 45,560 to 46,891 _RS00210 RS_RS00215: RS_RS00215 - HslU--HslV peptidase proteolytic subunit, at 46,926 to 47,462 _RS00215 RS_RS00220: RS_RS00220 - ABC transporter substrate-binding protein, at 47,608 to 49,200 _RS00220 RS_RS00225: RS_RS00225 - GTP-binding protein, at 49,301 to 50,599 _RS00225 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 46.963 kb on + strandat 46.963 kb on + strandat 46.963 kb on + strandat 46.963 kb on + strandat 46.964 kb on - strandat 46.964 kb on - strandat 47.063 kb on - strand, within RS_RS00215at 47.245 kb on + strand, within RS_RS00215at 47.332 kb on + strand, within RS_RS00215at 47.332 kb on + strand, within RS_RS00215at 47.333 kb on - strand, within RS_RS00215at 47.333 kb on - strand, within RS_RS00215at 47.333 kb on - strand, within RS_RS00215at 47.452 kb on + strandat 47.452 kb on + strandat 47.452 kb on + strandat 47.453 kb on - strandat 47.523 kb on + strandat 47.524 kb on - strandat 47.524 kb on - strandat 47.524 kb on - strandat 47.524 kb on - strandat 47.699 kb on + strandat 47.699 kb on + strandat 47.699 kb on + strandat 47.699 kb on + strandat 47.700 kb on - strandat 47.700 kb on - strandat 47.700 kb on - strandat 47.700 kb on - strandat 47.867 kb on + strand, within RS_RS00220at 47.867 kb on + strand, within RS_RS00220at 47.868 kb on - strand, within RS_RS00220at 47.868 kb on - strand, within RS_RS00220at 48.377 kb on + strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.563 kb on + strand, within RS_RS00220at 48.620 kb on + strand, within RS_RS00220at 48.621 kb on - strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.803 kb on + strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.812 kb on + strand, within RS_RS00220at 48.812 kb on + strand, within RS_RS00220at 48.813 kb on - strand, within RS_RS00220at 48.813 kb on - strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.858 kb on - strand, within RS_RS00220at 49.219 kb on + strandat 49.710 kb on + strand, within RS_RS00225at 49.711 kb on - strand, within RS_RS00225at 49.756 kb on + strand, within RS_RS00225at 49.756 kb on + strand, within RS_RS00225at 50.154 kb on + strand, within RS_RS00225at 50.155 kb on - strand, within RS_RS00225

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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46,963 + +0.1
46,963 + -0.5
46,963 + +0.1
46,963 + -0.2
46,964 - -0.7
46,964 - +0.1
47,063 - RS_RS00215 0.26 -1.3
47,245 + RS_RS00215 0.59 -0.5
47,332 + RS_RS00215 0.76 -0.6
47,332 + RS_RS00215 0.76 -0.5
47,333 - RS_RS00215 0.76 -1.8
47,333 - RS_RS00215 0.76 -0.2
47,333 - RS_RS00215 0.76 +0.1
47,452 + -1.2
47,452 + -0.0
47,452 + -0.0
47,453 - -0.5
47,523 + +0.5
47,524 - +0.7
47,524 - +0.2
47,524 - -0.2
47,524 - -1.2
47,699 + -0.8
47,699 + -0.9
47,699 + +1.1
47,699 + -0.6
47,700 - -0.2
47,700 - -0.4
47,700 - -0.1
47,700 - +2.3
47,867 + RS_RS00220 0.16 +0.3
47,867 + RS_RS00220 0.16 +2.3
47,868 - RS_RS00220 0.16 +0.0
47,868 - RS_RS00220 0.16 -0.6
48,377 + RS_RS00220 0.48 +0.2
48,378 - RS_RS00220 0.48 +0.8
48,378 - RS_RS00220 0.48 -0.7
48,378 - RS_RS00220 0.48 -0.4
48,378 - RS_RS00220 0.48 -0.2
48,563 + RS_RS00220 0.60 +0.9
48,620 + RS_RS00220 0.64 +2.2
48,621 - RS_RS00220 0.64 -0.5
48,701 + RS_RS00220 0.69 +1.4
48,701 + RS_RS00220 0.69 +0.1
48,701 + RS_RS00220 0.69 +0.8
48,702 - RS_RS00220 0.69 +0.1
48,702 - RS_RS00220 0.69 -0.4
48,702 - RS_RS00220 0.69 +2.3
48,803 + RS_RS00220 0.75 -0.5
48,804 - RS_RS00220 0.75 +0.4
48,804 - RS_RS00220 0.75 +3.3
48,804 - RS_RS00220 0.75 +1.8
48,804 - RS_RS00220 0.75 +0.3
48,804 - RS_RS00220 0.75 +0.2
48,812 + RS_RS00220 0.76 -1.0
48,812 + RS_RS00220 0.76 +0.4
48,813 - RS_RS00220 0.76 -1.0
48,813 - RS_RS00220 0.76 +0.6
48,857 + RS_RS00220 0.78 -0.9
48,857 + RS_RS00220 0.78 -0.3
48,857 + RS_RS00220 0.78 -0.6
48,858 - RS_RS00220 0.78 +0.4
49,219 + -0.5
49,710 + RS_RS00225 0.31 -0.9
49,711 - RS_RS00225 0.32 +0.3
49,756 + RS_RS00225 0.35 -0.0
49,756 + RS_RS00225 0.35 +0.1
50,154 + RS_RS00225 0.66 +0.8
50,155 - RS_RS00225 0.66 -0.7

Or see this region's nucleotide sequence