Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18300 and RS_RS26020 are separated by 65 nucleotides RS_RS26020 and RS_RS18305 are separated by 329 nucleotides
RS_RS18300: RS_RS18300 - glycogen debranching enzyme GlgX, at 300,326 to 302,590
_RS18300
RS_RS26020: RS_RS26020 - hypothetical protein, at 302,656 to 302,853
_RS26020
RS_RS18305: RS_RS18305 - glycogen-branching enzyme, at 303,183 to 305,510
_RS18305
Position (kb) 302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.665 kb on + strand, within RS_RS18300 at 301.665 kb on + strand, within RS_RS18300 at 301.666 kb on - strand, within RS_RS18300 at 301.666 kb on - strand, within RS_RS18300 at 301.668 kb on + strand, within RS_RS18300 at 301.696 kb on - strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.698 kb on + strand, within RS_RS18300 at 301.699 kb on - strand, within RS_RS18300 at 301.699 kb on - strand, within RS_RS18300 at 301.854 kb on + strand, within RS_RS18300 at 301.854 kb on + strand, within RS_RS18300 at 301.855 kb on - strand, within RS_RS18300 at 301.891 kb on - strand, within RS_RS18300 at 301.899 kb on + strand, within RS_RS18300 at 301.900 kb on - strand, within RS_RS18300 at 302.091 kb on + strand, within RS_RS18300 at 302.091 kb on + strand, within RS_RS18300 at 302.091 kb on + strand, within RS_RS18300 at 302.286 kb on + strand, within RS_RS18300 at 302.287 kb on - strand, within RS_RS18300 at 302.332 kb on - strand, within RS_RS18300 at 302.365 kb on - strand at 302.365 kb on - strand at 302.395 kb on - strand at 302.543 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.585 kb on + strand at 303.264 kb on + strand at 303.265 kb on - strand at 303.265 kb on - strand at 303.265 kb on - strand at 303.448 kb on + strand, within RS_RS18305 at 303.541 kb on + strand, within RS_RS18305 at 303.542 kb on - strand, within RS_RS18305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 301,665 + RS_RS18300 0.59 -0.1 301,665 + RS_RS18300 0.59 -0.4 301,666 - RS_RS18300 0.59 +1.8 301,666 - RS_RS18300 0.59 -0.4 301,668 + RS_RS18300 0.59 +0.8 301,696 - RS_RS18300 0.60 -0.4 301,698 + RS_RS18300 0.61 +0.1 301,698 + RS_RS18300 0.61 -0.6 301,698 + RS_RS18300 0.61 -0.1 301,698 + RS_RS18300 0.61 -0.4 301,698 + RS_RS18300 0.61 +0.2 301,698 + RS_RS18300 0.61 -0.9 301,699 - RS_RS18300 0.61 -1.3 301,699 - RS_RS18300 0.61 -1.9 301,854 + RS_RS18300 0.67 +0.9 301,854 + RS_RS18300 0.67 -1.4 301,855 - RS_RS18300 0.68 -2.2 301,891 - RS_RS18300 0.69 +1.4 301,899 + RS_RS18300 0.69 +1.3 301,900 - RS_RS18300 0.69 +2.3 302,091 + RS_RS18300 0.78 +0.1 302,091 + RS_RS18300 0.78 +0.8 302,091 + RS_RS18300 0.78 -1.2 302,286 + RS_RS18300 0.87 -0.7 302,287 - RS_RS18300 0.87 -1.9 302,332 - RS_RS18300 0.89 +0.4 302,365 - +0.1 302,365 - -0.8 302,395 - -1.4 302,543 + -1.3 302,551 - -0.3 302,551 - +0.5 302,585 + +0.7 303,264 + -0.3 303,265 - -2.8 303,265 - -2.0 303,265 - -1.9 303,448 + RS_RS18305 0.11 -0.2 303,541 + RS_RS18305 0.15 +0.6 303,542 - RS_RS18305 0.15 +0.0
Or see this region's nucleotide sequence