Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20085 and RS_RS20090 overlap by 4 nucleotides RS_RS20090 and RS_RS20095 overlap by 4 nucleotides RS_RS20095 and RS_RS20100 are separated by 2 nucleotides
RS_RS20085: RS_RS20085 - precorrin-4 C(11)-methyltransferase, at 751,772 to 752,587
_RS20085
RS_RS20090: RS_RS20090 - precorrin-2 C(20)-methyltransferase, at 752,584 to 753,315
_RS20090
RS_RS20095: RS_RS20095 - cobalt-precorrin-5B (C(1))-methyltransferase, at 753,312 to 754,463
_RS20095
RS_RS20100: RS_RS20100 - membrane protein, at 754,466 to 756,070
_RS20100
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 752.328 kb on + strand, within RS_RS20085 at 752.329 kb on - strand, within RS_RS20085 at 752.329 kb on - strand, within RS_RS20085 at 752.392 kb on - strand, within RS_RS20085 at 752.493 kb on + strand, within RS_RS20085 at 752.493 kb on + strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.577 kb on + strand at 752.577 kb on + strand at 752.577 kb on + strand at 752.578 kb on - strand at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.988 kb on - strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 753.023 kb on + strand, within RS_RS20090 at 753.023 kb on + strand, within RS_RS20090 at 753.081 kb on - strand, within RS_RS20090 at 753.081 kb on - strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.213 kb on - strand, within RS_RS20090 at 753.497 kb on + strand, within RS_RS20095 at 753.497 kb on + strand, within RS_RS20095 at 753.498 kb on - strand, within RS_RS20095 at 753.700 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 754.220 kb on - strand, within RS_RS20095 at 754.292 kb on - strand, within RS_RS20095 at 754.292 kb on - strand, within RS_RS20095 at 754.500 kb on + strand at 754.501 kb on - strand at 754.501 kb on - strand at 754.980 kb on + strand, within RS_RS20100 at 754.981 kb on - strand, within RS_RS20100 at 754.981 kb on - strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.122 kb on - strand, within RS_RS20100 at 755.247 kb on + strand, within RS_RS20100 at 755.248 kb on - strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.439 kb on + strand, within RS_RS20100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 752,328 + RS_RS20085 0.68 -0.2 752,329 - RS_RS20085 0.68 -0.0 752,329 - RS_RS20085 0.68 +0.0 752,392 - RS_RS20085 0.76 -0.7 752,493 + RS_RS20085 0.88 -0.9 752,493 + RS_RS20085 0.88 +2.1 752,494 - RS_RS20085 0.88 +0.1 752,494 - RS_RS20085 0.88 +2.1 752,494 - RS_RS20085 0.88 -1.7 752,577 + -0.5 752,577 + -0.6 752,577 + -1.2 752,578 - -0.6 752,987 + RS_RS20090 0.55 -0.8 752,987 + RS_RS20090 0.55 -0.9 752,987 + RS_RS20090 0.55 -3.0 752,987 + RS_RS20090 0.55 -0.5 752,987 + RS_RS20090 0.55 +0.1 752,988 - RS_RS20090 0.55 -0.0 752,996 + RS_RS20090 0.56 -0.4 752,996 + RS_RS20090 0.56 +3.1 752,996 + RS_RS20090 0.56 -1.1 752,996 + RS_RS20090 0.56 -0.1 752,997 - RS_RS20090 0.56 -0.2 752,997 - RS_RS20090 0.56 -1.2 752,997 - RS_RS20090 0.56 +0.1 752,997 - RS_RS20090 0.56 -1.0 753,023 + RS_RS20090 0.60 +2.1 753,023 + RS_RS20090 0.60 -1.3 753,081 - RS_RS20090 0.68 -0.7 753,081 - RS_RS20090 0.68 -1.9 753,212 + RS_RS20090 0.86 +1.6 753,212 + RS_RS20090 0.86 -1.9 753,212 + RS_RS20090 0.86 +1.8 753,213 - RS_RS20090 0.86 +0.3 753,497 + RS_RS20095 0.16 +0.3 753,497 + RS_RS20095 0.16 -1.0 753,498 - RS_RS20095 0.16 +0.4 753,700 + RS_RS20095 0.34 +0.1 753,844 + RS_RS20095 0.46 -0.9 753,844 + RS_RS20095 0.46 -1.9 753,844 + RS_RS20095 0.46 -1.1 753,844 + RS_RS20095 0.46 +1.1 753,845 - RS_RS20095 0.46 -0.2 753,845 - RS_RS20095 0.46 +3.0 753,845 - RS_RS20095 0.46 +1.1 753,845 - RS_RS20095 0.46 +1.1 754,220 - RS_RS20095 0.79 -1.9 754,292 - RS_RS20095 0.85 +0.1 754,292 - RS_RS20095 0.85 -0.2 754,500 + -0.6 754,501 - -0.0 754,501 - -0.6 754,980 + RS_RS20100 0.32 +0.3 754,981 - RS_RS20100 0.32 +2.3 754,981 - RS_RS20100 0.32 -0.5 755,121 + RS_RS20100 0.41 -2.0 755,121 + RS_RS20100 0.41 -0.6 755,121 + RS_RS20100 0.41 -1.1 755,121 + RS_RS20100 0.41 -1.2 755,122 - RS_RS20100 0.41 -1.1 755,247 + RS_RS20100 0.49 -1.2 755,248 - RS_RS20100 0.49 -0.9 755,403 + RS_RS20100 0.58 -1.8 755,403 + RS_RS20100 0.58 -0.7 755,403 + RS_RS20100 0.58 -1.1 755,404 - RS_RS20100 0.58 -0.1 755,404 - RS_RS20100 0.58 -0.7 755,404 - RS_RS20100 0.58 -1.2 755,404 - RS_RS20100 0.58 -1.0 755,404 - RS_RS20100 0.58 -1.0 755,404 - RS_RS20100 0.58 +2.1 755,439 + RS_RS20100 0.61 +2.1
Or see this region's nucleotide sequence