Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18285 and RS_RS18290 overlap by 4 nucleotides RS_RS18290 and RS_RS18295 overlap by 4 nucleotides
RS_RS18285: RS_RS18285 - malto-oligosyltrehalose synthase, at 293,321 to 296,143
_RS18285
RS_RS18290: RS_RS18290 - 4-alpha-glucanotransferase, at 296,140 to 298,464
_RS18290
RS_RS18295: RS_RS18295 - malto-oligosyltrehalose trehalohydrolase, at 298,461 to 300,329
_RS18295
Position (kb) 296
297
298
299 Strain fitness (log2 ratio) -1
0
1
2 at 295.587 kb on + strand, within RS_RS18285 at 295.587 kb on + strand, within RS_RS18285 at 295.695 kb on + strand, within RS_RS18285 at 295.968 kb on + strand at 296.013 kb on + strand at 296.014 kb on - strand at 296.014 kb on - strand at 296.738 kb on + strand, within RS_RS18290 at 296.906 kb on + strand, within RS_RS18290 at 296.907 kb on - strand, within RS_RS18290 at 296.907 kb on - strand, within RS_RS18290 at 297.891 kb on - strand, within RS_RS18290 at 297.891 kb on - strand, within RS_RS18290 at 297.965 kb on + strand, within RS_RS18290 at 297.965 kb on + strand, within RS_RS18290 at 298.973 kb on - strand, within RS_RS18295 at 298.973 kb on - strand, within RS_RS18295 at 299.221 kb on + strand, within RS_RS18295 at 299.221 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.285 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 295,587 + RS_RS18285 0.80 -1.2 295,587 + RS_RS18285 0.80 +0.3 295,695 + RS_RS18285 0.84 +2.3 295,968 + +0.3 296,013 + -1.0 296,014 - -1.6 296,014 - -0.3 296,738 + RS_RS18290 0.26 +0.3 296,906 + RS_RS18290 0.33 -0.3 296,907 - RS_RS18290 0.33 -0.7 296,907 - RS_RS18290 0.33 +1.3 297,891 - RS_RS18290 0.75 +0.7 297,891 - RS_RS18290 0.75 +2.0 297,965 + RS_RS18290 0.78 -0.4 297,965 + RS_RS18290 0.78 +0.3 298,973 - RS_RS18295 0.27 -0.1 298,973 - RS_RS18295 0.27 +0.3 299,221 + RS_RS18295 0.41 +0.2 299,221 + RS_RS18295 0.41 +1.8 299,284 + RS_RS18295 0.44 +0.9 299,284 + RS_RS18295 0.44 +2.3 299,284 + RS_RS18295 0.44 +1.0 299,285 - RS_RS18295 0.44 +1.4 299,288 - RS_RS18295 0.44 -1.5 299,288 - RS_RS18295 0.44 +0.2 299,288 - RS_RS18295 0.44 +0.7
Or see this region's nucleotide sequence