Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS12100

Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS12095 and RS_RS12100 are separated by 13 nucleotidesRS_RS12100 and RS_RS12105 are separated by 128 nucleotides RS_RS12095: RS_RS12095 - prolipoprotein diacylglyceryl transferase, at 2,614,791 to 2,615,702 _RS12095 RS_RS12100: RS_RS12100 - LysR family transcriptional regulator, at 2,615,716 to 2,616,651 _RS12100 RS_RS12105: RS_RS12105 - dihydroxy-acid dehydratase, at 2,616,780 to 2,618,453 _RS12105 Position (kb) 2615 2616 2617Strain fitness (log2 ratio) -1 0 1at 2614.752 kb on + strandat 2616.024 kb on - strand, within RS_RS12100at 2616.217 kb on + strand, within RS_RS12100at 2616.344 kb on + strand, within RS_RS12100

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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2,614,752 + -0.2
2,616,024 - RS_RS12100 0.33 -1.1
2,616,217 + RS_RS12100 0.54 -0.3
2,616,344 + RS_RS12100 0.67 -1.1

Or see this region's nucleotide sequence