Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08245 and RS_RS08250 are separated by 95 nucleotides RS_RS08250 and RS_RS08255 are separated by 4 nucleotides RS_RS08255 and RS_RS08260 are separated by 42 nucleotides
RS_RS08245: RS_RS08245 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,757,469 to 1,758,830
_RS08245
RS_RS08250: RS_RS08250 - acetyl-CoA C-acyltransferase, at 1,758,926 to 1,760,110
_RS08250
RS_RS08255: RS_RS08255 - hypothetical protein, at 1,760,115 to 1,760,822
_RS08255
RS_RS08260: RS_RS08260 - cystathionine beta-lyase, at 1,760,865 to 1,762,079
_RS08260
Position (kb) 1758
1759
1760
1761 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1758.205 kb on - strand, within RS_RS08245 at 1758.210 kb on + strand, within RS_RS08245 at 1758.271 kb on - strand, within RS_RS08245 at 1758.271 kb on - strand, within RS_RS08245 at 1758.502 kb on - strand, within RS_RS08245 at 1758.726 kb on + strand at 1758.884 kb on + strand at 1758.884 kb on + strand at 1758.886 kb on + strand at 1759.121 kb on + strand, within RS_RS08250 at 1759.122 kb on - strand, within RS_RS08250 at 1759.122 kb on - strand, within RS_RS08250 at 1759.122 kb on - strand, within RS_RS08250 at 1760.383 kb on - strand, within RS_RS08255 at 1760.473 kb on - strand, within RS_RS08255 at 1760.473 kb on - strand, within RS_RS08255 at 1760.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,758,205 - RS_RS08245 0.54 -1.0 1,758,210 + RS_RS08245 0.54 -0.3 1,758,271 - RS_RS08245 0.59 -3.5 1,758,271 - RS_RS08245 0.59 -0.4 1,758,502 - RS_RS08245 0.76 -1.5 1,758,726 + -0.4 1,758,884 + -1.0 1,758,884 + -0.7 1,758,886 + -0.7 1,759,121 + RS_RS08250 0.16 +1.6 1,759,122 - RS_RS08250 0.17 -1.6 1,759,122 - RS_RS08250 0.17 +0.6 1,759,122 - RS_RS08250 0.17 +0.0 1,760,383 - RS_RS08255 0.38 +0.1 1,760,473 - RS_RS08255 0.51 +0.4 1,760,473 - RS_RS08255 0.51 +0.4 1,760,821 - -0.8
Or see this region's nucleotide sequence