Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03295 and RS_RS03300 are separated by 80 nucleotides RS_RS03300 and RS_RS03305 are separated by 313 nucleotides RS_RS03305 and RS_RS03310 are separated by 60 nucleotides
RS_RS03295: RS_RS03295 - secretin, at 701,858 to 703,762
_RS03295
RS_RS03300: RS_RS03300 - Flp pilus assembly protein CpaB, at 703,843 to 704,709
_RS03300
RS_RS03305: RS_RS03305 - type 4 prepilin peptidase 1, at 705,023 to 705,541
_RS03305
RS_RS03310: RS_RS03310 - Flp family type IVb pilin, at 705,602 to 705,763
_RS03310
Position (kb) 703
704
705 Strain fitness (log2 ratio) -1
0
1
2 at 702.963 kb on - strand, within RS_RS03295 at 703.137 kb on - strand, within RS_RS03295 at 703.600 kb on + strand at 703.600 kb on + strand at 703.782 kb on - strand at 704.300 kb on + strand, within RS_RS03300 at 704.300 kb on + strand, within RS_RS03300 at 704.300 kb on + strand, within RS_RS03300 at 704.301 kb on - strand, within RS_RS03300 at 704.301 kb on - strand, within RS_RS03300 at 704.769 kb on + strand at 704.770 kb on - strand at 705.014 kb on - strand at 705.325 kb on - strand, within RS_RS03305 at 705.603 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 702,963 - RS_RS03295 0.58 +1.3 703,137 - RS_RS03295 0.67 +0.7 703,600 + -0.0 703,600 + -0.2 703,782 - -0.8 704,300 + RS_RS03300 0.53 -0.5 704,300 + RS_RS03300 0.53 +0.2 704,300 + RS_RS03300 0.53 -1.4 704,301 - RS_RS03300 0.53 -0.4 704,301 - RS_RS03300 0.53 -0.8 704,769 + -0.5 704,770 - -0.5 705,014 - +2.3 705,325 - RS_RS03305 0.58 -0.5 705,603 + +0.9
Or see this region's nucleotide sequence