Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03075 and RS_RS03080 are separated by 524 nucleotides RS_RS03080 and RS_RS03085 are separated by 65 nucleotides
RS_RS03075: RS_RS03075 - hypothetical protein, at 659,837 to 660,409
_RS03075
RS_RS03080: RS_RS03080 - EamA/RhaT family transporter, at 660,934 to 661,947
_RS03080
RS_RS03085: RS_RS03085 - LysR family transcriptional regulator, at 662,013 to 662,882
_RS03085
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.102 kb on + strand, within RS_RS03075 at 660.103 kb on - strand, within RS_RS03075 at 660.103 kb on - strand, within RS_RS03075 at 660.147 kb on + strand, within RS_RS03075 at 660.148 kb on - strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.240 kb on + strand, within RS_RS03075 at 660.241 kb on - strand, within RS_RS03075 at 660.241 kb on - strand, within RS_RS03075 at 660.295 kb on + strand, within RS_RS03075 at 660.295 kb on + strand, within RS_RS03075 at 660.296 kb on - strand, within RS_RS03075 at 660.394 kb on + strand at 660.394 kb on + strand at 660.395 kb on - strand at 660.435 kb on - strand at 660.549 kb on + strand at 660.652 kb on + strand at 660.652 kb on + strand at 660.653 kb on - strand at 660.659 kb on + strand at 660.751 kb on + strand at 660.752 kb on - strand at 660.761 kb on + strand at 660.788 kb on + strand at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.154 kb on + strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.155 kb on - strand, within RS_RS03080 at 661.167 kb on - strand, within RS_RS03080 at 661.167 kb on - strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.183 kb on + strand, within RS_RS03080 at 661.384 kb on + strand, within RS_RS03080 at 661.534 kb on + strand, within RS_RS03080 at 661.885 kb on + strand at 661.886 kb on - strand at 661.886 kb on - strand at 661.920 kb on + strand at 661.921 kb on - strand at 661.939 kb on + strand at 661.939 kb on + strand at 662.322 kb on + strand, within RS_RS03085 at 662.334 kb on + strand, within RS_RS03085 at 662.569 kb on - strand, within RS_RS03085 at 662.632 kb on - strand, within RS_RS03085 at 662.644 kb on - strand, within RS_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 660,102 + RS_RS03075 0.46 +1.4 660,103 - RS_RS03075 0.46 -0.2 660,103 - RS_RS03075 0.46 -0.1 660,147 + RS_RS03075 0.54 +1.4 660,148 - RS_RS03075 0.54 -0.4 660,240 + RS_RS03075 0.70 -0.4 660,240 + RS_RS03075 0.70 -0.6 660,240 + RS_RS03075 0.70 +1.0 660,240 + RS_RS03075 0.70 +2.4 660,240 + RS_RS03075 0.70 -0.3 660,240 + RS_RS03075 0.70 -1.0 660,240 + RS_RS03075 0.70 -0.3 660,241 - RS_RS03075 0.71 +0.2 660,241 - RS_RS03075 0.71 -0.0 660,295 + RS_RS03075 0.80 -0.5 660,295 + RS_RS03075 0.80 -1.0 660,296 - RS_RS03075 0.80 -1.3 660,394 + +1.8 660,394 + -0.6 660,395 - +0.4 660,435 - -0.2 660,549 + -0.4 660,652 + -0.7 660,652 + -1.4 660,653 - -0.6 660,659 + -0.5 660,751 + +0.1 660,752 - -0.2 660,761 + -0.2 660,788 + +1.8 661,154 + RS_RS03080 0.22 +1.0 661,154 + RS_RS03080 0.22 +1.4 661,154 + RS_RS03080 0.22 +0.6 661,154 + RS_RS03080 0.22 -0.3 661,154 + RS_RS03080 0.22 -0.2 661,155 - RS_RS03080 0.22 -0.4 661,155 - RS_RS03080 0.22 -1.3 661,155 - RS_RS03080 0.22 -0.0 661,155 - RS_RS03080 0.22 -1.9 661,155 - RS_RS03080 0.22 -1.0 661,155 - RS_RS03080 0.22 +1.0 661,167 - RS_RS03080 0.23 +1.1 661,167 - RS_RS03080 0.23 +0.8 661,183 + RS_RS03080 0.25 -0.9 661,183 + RS_RS03080 0.25 -1.0 661,183 + RS_RS03080 0.25 +3.0 661,183 + RS_RS03080 0.25 -0.2 661,183 + RS_RS03080 0.25 +2.4 661,183 + RS_RS03080 0.25 -1.5 661,384 + RS_RS03080 0.44 -0.7 661,534 + RS_RS03080 0.59 -1.5 661,885 + +0.1 661,886 - +0.4 661,886 - +0.5 661,920 + +1.5 661,921 - -1.4 661,939 + +1.4 661,939 + -0.1 662,322 + RS_RS03085 0.36 +0.6 662,334 + RS_RS03085 0.37 +2.4 662,569 - RS_RS03085 0.64 +1.4 662,632 - RS_RS03085 0.71 -0.6 662,644 - RS_RS03085 0.73 -0.4
Or see this region's nucleotide sequence