Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03065

Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03055 and RS_RS03060 are separated by 15 nucleotidesRS_RS03060 and RS_RS03065 overlap by 20 nucleotidesRS_RS03065 and RS_RS03070 overlap by 4 nucleotidesRS_RS03070 and RS_RS03075 are separated by 88 nucleotides RS_RS03055: RS_RS03055 - hypothetical protein, at 656,848 to 657,765 _RS03055 RS_RS03060: RS_RS03060 - FMN-binding protein, at 657,781 to 658,296 _RS03060 RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173 _RS03065 RS_RS03070: RS_RS03070 - hypothetical protein, at 659,170 to 659,748 _RS03070 RS_RS03075: RS_RS03075 - hypothetical protein, at 659,837 to 660,409 _RS03075 Position (kb) 658 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 657.286 kb on + strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.550 kb on + strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.731 kb on - strandat 657.755 kb on - strandat 657.757 kb on + strandat 657.757 kb on + strandat 657.800 kb on + strandat 657.835 kb on + strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 658.126 kb on + strand, within RS_RS03060at 658.242 kb on + strand, within RS_RS03060at 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.294 kb on + strandat 658.502 kb on + strand, within RS_RS03065at 658.503 kb on - strand, within RS_RS03065at 659.240 kb on - strand, within RS_RS03070at 659.240 kb on - strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.606 kb on - strand, within RS_RS03070at 659.608 kb on - strand, within RS_RS03070at 659.872 kb on - strandat 660.102 kb on + strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.147 kb on + strand, within RS_RS03075at 660.148 kb on - strand, within RS_RS03075

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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657,286 + RS_RS03055 0.48 +0.2
657,286 + RS_RS03055 0.48 +0.0
657,287 - RS_RS03055 0.48 -0.7
657,287 - RS_RS03055 0.48 -0.4
657,287 - RS_RS03055 0.48 -0.6
657,287 - RS_RS03055 0.48 +0.0
657,542 - RS_RS03055 0.76 +0.7
657,542 - RS_RS03055 0.76 -1.9
657,542 - RS_RS03055 0.76 -3.2
657,550 + RS_RS03055 0.76 +0.0
657,551 - RS_RS03055 0.77 +0.4
657,551 - RS_RS03055 0.77 -0.6
657,583 + RS_RS03055 0.80 -0.1
657,583 + RS_RS03055 0.80 +0.6
657,583 + RS_RS03055 0.80 +0.4
657,583 + RS_RS03055 0.80 +0.0
657,584 - RS_RS03055 0.80 +0.6
657,584 - RS_RS03055 0.80 +0.5
657,731 - +0.4
657,755 - -0.1
657,757 + -0.6
657,757 + +1.4
657,800 + +0.8
657,835 + RS_RS03060 0.10 +0.8
657,836 - RS_RS03060 0.11 +1.4
657,836 - RS_RS03060 0.11 +1.6
657,847 + RS_RS03060 0.13 -1.3
657,847 + RS_RS03060 0.13 +0.1
657,848 - RS_RS03060 0.13 -1.8
657,848 - RS_RS03060 0.13 +0.9
658,126 + RS_RS03060 0.67 +0.6
658,242 + RS_RS03060 0.89 -0.2
658,276 + -1.2
658,276 + -1.0
658,276 + +3.5
658,276 + +0.3
658,277 - +1.2
658,277 - +0.1
658,277 - +0.3
658,277 - -1.3
658,294 + +0.4
658,502 + RS_RS03065 0.25 +0.2
658,503 - RS_RS03065 0.25 +0.8
659,240 - RS_RS03070 0.12 +1.7
659,240 - RS_RS03070 0.12 +0.9
659,512 + RS_RS03070 0.59 +1.4
659,512 + RS_RS03070 0.59 +0.5
659,512 + RS_RS03070 0.59 -0.0
659,512 + RS_RS03070 0.59 +0.1
659,512 + RS_RS03070 0.59 +0.7
659,513 - RS_RS03070 0.59 +3.7
659,513 - RS_RS03070 0.59 -0.5
659,513 - RS_RS03070 0.59 +2.4
659,605 + RS_RS03070 0.75 -0.0
659,605 + RS_RS03070 0.75 +0.4
659,606 - RS_RS03070 0.75 -0.8
659,608 - RS_RS03070 0.76 -0.5
659,872 - -1.7
660,102 + RS_RS03075 0.46 +1.4
660,103 - RS_RS03075 0.46 -0.2
660,103 - RS_RS03075 0.46 -0.1
660,147 + RS_RS03075 0.54 +1.4
660,148 - RS_RS03075 0.54 -0.4

Or see this region's nucleotide sequence