Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02915 and RS_RS02920 are separated by 362 nucleotides RS_RS02920 and RS_RS02925 overlap by 4 nucleotides
RS_RS02915: RS_RS02915 - avrd-related protein, at 625,470 to 626,328
_RS02915
RS_RS02920: RS_RS02920 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 626,691 to 627,218
_RS02920
RS_RS02925: RS_RS02925 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 627,215 to 628,759
_RS02925
Position (kb) 626
627
628 Strain fitness (log2 ratio) -1
0
1
2 at 625.928 kb on + strand, within RS_RS02915 at 625.929 kb on - strand, within RS_RS02915 at 626.877 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 627.192 kb on - strand at 627.234 kb on + strand at 627.339 kb on + strand at 627.706 kb on - strand, within RS_RS02925 at 627.706 kb on - strand, within RS_RS02925 at 628.125 kb on + strand, within RS_RS02925 at 628.126 kb on - strand, within RS_RS02925 at 628.126 kb on - strand, within RS_RS02925 at 628.152 kb on + strand, within RS_RS02925 at 628.152 kb on + strand, within RS_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 625,928 + RS_RS02915 0.53 -0.2 625,929 - RS_RS02915 0.53 -0.5 626,877 + RS_RS02920 0.35 -0.4 626,908 + RS_RS02920 0.41 +2.7 626,908 + RS_RS02920 0.41 +0.3 626,909 - RS_RS02920 0.41 +0.6 626,909 - RS_RS02920 0.41 +1.2 626,909 - RS_RS02920 0.41 -0.9 627,192 - -0.7 627,234 + -0.9 627,339 + -0.1 627,706 - RS_RS02925 0.32 -0.4 627,706 - RS_RS02925 0.32 -1.3 628,125 + RS_RS02925 0.59 -0.7 628,126 - RS_RS02925 0.59 +0.3 628,126 - RS_RS02925 0.59 -0.0 628,152 + RS_RS02925 0.61 +0.2 628,152 + RS_RS02925 0.61 +0.0
Or see this region's nucleotide sequence