Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02780 and RS_RS02785 are separated by 149 nucleotides RS_RS02785 and RS_RS02790 are separated by 193 nucleotides RS_RS02790 and RS_RS02795 are separated by 266 nucleotides
RS_RS02780: RS_RS02780 - succinate--CoA ligase subunit alpha, at 600,028 to 600,909
_RS02780
RS_RS02785: RS_RS02785 - hypothetical protein, at 601,059 to 601,757
_RS02785
RS_RS02790: RS_RS02790 - pilin, at 601,951 to 602,472
_RS02790
RS_RS02795: RS_RS02795 - pilin, at 602,739 to 603,245
_RS02795
Position (kb) 601
602 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 600.250 kb on + strand, within RS_RS02780 at 600.250 kb on + strand, within RS_RS02780 at 600.517 kb on + strand, within RS_RS02780 at 600.907 kb on + strand at 601.006 kb on + strand at 601.006 kb on + strand at 601.006 kb on + strand at 601.007 kb on - strand at 601.007 kb on - strand at 601.008 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.273 kb on - strand, within RS_RS02785 at 601.273 kb on - strand, within RS_RS02785 at 601.306 kb on - strand, within RS_RS02785 at 601.306 kb on - strand, within RS_RS02785 at 601.602 kb on + strand, within RS_RS02785 at 601.603 kb on - strand, within RS_RS02785 at 601.781 kb on + strand at 602.040 kb on - strand, within RS_RS02790 at 602.075 kb on - strand, within RS_RS02790 at 602.075 kb on - strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.254 kb on + strand, within RS_RS02790 at 602.254 kb on + strand, within RS_RS02790 at 602.255 kb on - strand, within RS_RS02790 at 602.286 kb on + strand, within RS_RS02790 at 602.287 kb on - strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.295 kb on - strand, within RS_RS02790 at 602.325 kb on - strand, within RS_RS02790 at 602.325 kb on - strand, within RS_RS02790 at 602.449 kb on + strand at 602.449 kb on + strand at 602.694 kb on + strand at 602.694 kb on + strand at 602.695 kb on - strand at 602.695 kb on - strand at 602.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 600,250 + RS_RS02780 0.25 -0.7 600,250 + RS_RS02780 0.25 -1.1 600,517 + RS_RS02780 0.55 -1.1 600,907 + -1.2 601,006 + -0.8 601,006 + -0.3 601,006 + +0.4 601,007 - -1.3 601,007 - -1.5 601,008 + -0.7 601,040 + +0.2 601,040 + +1.5 601,040 + +0.1 601,040 + -0.0 601,040 + +0.6 601,273 - RS_RS02785 0.31 +0.3 601,273 - RS_RS02785 0.31 -0.9 601,306 - RS_RS02785 0.35 +0.6 601,306 - RS_RS02785 0.35 -0.3 601,602 + RS_RS02785 0.78 +0.6 601,603 - RS_RS02785 0.78 -0.5 601,781 + +1.4 602,040 - RS_RS02790 0.17 -0.0 602,075 - RS_RS02790 0.24 -1.2 602,075 - RS_RS02790 0.24 +0.4 602,163 + RS_RS02790 0.41 -0.6 602,163 + RS_RS02790 0.41 +1.0 602,163 + RS_RS02790 0.41 +0.6 602,164 - RS_RS02790 0.41 +0.5 602,164 - RS_RS02790 0.41 -0.4 602,164 - RS_RS02790 0.41 +0.2 602,164 - RS_RS02790 0.41 -0.8 602,254 + RS_RS02790 0.58 -0.9 602,254 + RS_RS02790 0.58 +0.0 602,255 - RS_RS02790 0.58 +2.4 602,286 + RS_RS02790 0.64 -0.3 602,287 - RS_RS02790 0.64 +1.0 602,294 + RS_RS02790 0.66 +0.8 602,294 + RS_RS02790 0.66 -5.2 602,294 + RS_RS02790 0.66 +0.4 602,295 - RS_RS02790 0.66 +0.1 602,325 - RS_RS02790 0.72 +0.2 602,325 - RS_RS02790 0.72 +0.3 602,449 + -1.8 602,449 + -0.5 602,694 + +2.0 602,694 + +0.6 602,695 - +2.4 602,695 - +1.6 602,715 - +0.1
Or see this region's nucleotide sequence