Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02670 and RS_RS02675 are separated by 132 nucleotides RS_RS02675 and RS_RS02680 are separated by 10 nucleotides RS_RS02680 and RS_RS02685 are separated by 18 nucleotides
RS_RS02670: RS_RS02670 - long-chain fatty acid--CoA ligase, at 574,378 to 576,103
_RS02670
RS_RS02675: RS_RS02675 - hypothetical protein, at 576,236 to 576,649
_RS02675
RS_RS02680: RS_RS02680 - 3-oxoacyl-ACP reductase, at 576,660 to 578,072
_RS02680
RS_RS02685: RS_RS02685 - acyl-CoA dehydrogenase, at 578,091 to 580,598
_RS02685
Position (kb) 576
577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 575.817 kb on + strand, within RS_RS02670 at 576.338 kb on + strand, within RS_RS02675 at 576.947 kb on - strand, within RS_RS02680 at 576.947 kb on - strand, within RS_RS02680 at 576.947 kb on - strand, within RS_RS02680 at 577.223 kb on - strand, within RS_RS02680 at 577.453 kb on + strand, within RS_RS02680 at 577.522 kb on + strand, within RS_RS02680 at 577.699 kb on + strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 578.059 kb on + strand at 578.059 kb on + strand at 578.059 kb on + strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.435 kb on - strand, within RS_RS02685 at 578.435 kb on - strand, within RS_RS02685 at 578.615 kb on - strand, within RS_RS02685 at 578.716 kb on + strand, within RS_RS02685 at 578.716 kb on + strand, within RS_RS02685 at 578.717 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 575,817 + RS_RS02670 0.83 +1.1 576,338 + RS_RS02675 0.25 -1.1 576,947 - RS_RS02680 0.20 +0.1 576,947 - RS_RS02680 0.20 -0.0 576,947 - RS_RS02680 0.20 -0.4 577,223 - RS_RS02680 0.40 -0.3 577,453 + RS_RS02680 0.56 +0.1 577,522 + RS_RS02680 0.61 +0.2 577,699 + RS_RS02680 0.74 +0.1 577,700 - RS_RS02680 0.74 -0.2 577,700 - RS_RS02680 0.74 -0.6 577,700 - RS_RS02680 0.74 +1.1 577,700 - RS_RS02680 0.74 +0.9 578,059 + -0.6 578,059 + +0.3 578,059 + +0.2 578,060 - +0.4 578,060 - -1.4 578,060 - +1.4 578,060 - -1.8 578,060 - +0.9 578,435 - RS_RS02685 0.14 -0.3 578,435 - RS_RS02685 0.14 -0.3 578,615 - RS_RS02685 0.21 -0.7 578,716 + RS_RS02685 0.25 +2.4 578,716 + RS_RS02685 0.25 +2.1 578,717 - RS_RS02685 0.25 -1.1 579,035 - RS_RS02685 0.38 -0.2 579,035 - RS_RS02685 0.38 -0.0 579,035 - RS_RS02685 0.38 +1.4
Or see this region's nucleotide sequence