Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02655 and RS_RS02660 are separated by 110 nucleotides RS_RS02660 and RS_RS02665 are separated by 201 nucleotides RS_RS02665 and RS_RS02670 are separated by 45 nucleotides
RS_RS02655: RS_RS02655 - NAD(P)/FAD-dependent oxidoreductase, at 571,524 to 572,525
_RS02655
RS_RS02660: RS_RS02660 - hypothetical protein, at 572,636 to 573,234
_RS02660
RS_RS02665: RS_RS02665 - DUF1571 domain-containing protein, at 573,436 to 574,332
_RS02665
RS_RS02670: RS_RS02670 - long-chain fatty acid--CoA ligase, at 574,378 to 576,103
_RS02670
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 572.478 kb on + strand at 572.646 kb on + strand at 572.646 kb on + strand at 572.646 kb on + strand at 572.647 kb on - strand at 572.763 kb on + strand, within RS_RS02660 at 572.764 kb on - strand, within RS_RS02660 at 572.764 kb on - strand, within RS_RS02660 at 572.806 kb on - strand, within RS_RS02660 at 573.098 kb on + strand, within RS_RS02660 at 573.263 kb on + strand at 573.263 kb on + strand at 573.263 kb on + strand at 573.263 kb on + strand at 573.264 kb on - strand at 573.411 kb on + strand at 573.411 kb on + strand at 573.584 kb on + strand, within RS_RS02665 at 573.585 kb on - strand, within RS_RS02665 at 573.585 kb on - strand, within RS_RS02665 at 573.741 kb on + strand, within RS_RS02665 at 573.742 kb on - strand, within RS_RS02665 at 574.032 kb on - strand, within RS_RS02665 at 574.037 kb on + strand, within RS_RS02665 at 574.506 kb on - strand at 574.506 kb on - strand at 574.506 kb on - strand at 574.680 kb on - strand, within RS_RS02670 at 574.737 kb on - strand, within RS_RS02670 at 575.018 kb on - strand, within RS_RS02670 at 575.023 kb on - strand, within RS_RS02670 at 575.023 kb on - strand, within RS_RS02670 at 575.300 kb on + strand, within RS_RS02670 at 575.301 kb on - strand, within RS_RS02670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 572,478 + +0.6 572,646 + -1.0 572,646 + +2.3 572,646 + -0.5 572,647 - +0.1 572,763 + RS_RS02660 0.21 -0.3 572,764 - RS_RS02660 0.21 -0.6 572,764 - RS_RS02660 0.21 +1.6 572,806 - RS_RS02660 0.28 -0.4 573,098 + RS_RS02660 0.77 -0.2 573,263 + +2.5 573,263 + -0.5 573,263 + -2.1 573,263 + +2.5 573,264 - -0.1 573,411 + +0.7 573,411 + +0.1 573,584 + RS_RS02665 0.16 +1.5 573,585 - RS_RS02665 0.17 +0.6 573,585 - RS_RS02665 0.17 +0.6 573,741 + RS_RS02665 0.34 +1.8 573,742 - RS_RS02665 0.34 +0.9 574,032 - RS_RS02665 0.66 +0.9 574,037 + RS_RS02665 0.67 +2.8 574,506 - +1.3 574,506 - -0.2 574,506 - -0.9 574,680 - RS_RS02670 0.17 +2.5 574,737 - RS_RS02670 0.21 +0.1 575,018 - RS_RS02670 0.37 -0.9 575,023 - RS_RS02670 0.37 +0.9 575,023 - RS_RS02670 0.37 +0.3 575,300 + RS_RS02670 0.53 +1.5 575,301 - RS_RS02670 0.53 +1.8
Or see this region's nucleotide sequence